Affine Alignment
 
Alignment between HLA-B (top ENST00000412585.7 362aa) and HLA-A (bottom ENST00000376809.10 365aa) score 31350

001 MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRF 060
    | ||||||+||||| |||||+|||||||||||+||||||||||||||+||||||||||||
001 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 060

061 DSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQ 120
    |||||| | ||||||||||||||||+ |+  |||+||||  |  ||||||||||||||+|
061 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ 120

121 SMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQR 180
     ||||||| ||| |||+ | ||||||||||||||||||||| |||||+|||||| |||| 
121 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL 180

181 RAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLT 240
    ||||+| |||||||||||||+ |+| ||||||+|||||||||||||||||||||||||||
181 RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 240

241 WQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP 300
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 300

301 SSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSL 360
    ||| |+|||||+||| +|  |+ |||||||| |||||  |||||+||| |||||||||||
301 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 360

361 TA 362
    ||
361 TA 362