Affine Alignment
 
Alignment between EMX2 (top ENST00000553456.5 252aa) and HOXD9 (bottom ENST00000249499.8 352aa) score 2850

004 PAPKRCFTIESLVAKDSPLPASRSEDPIRPAALSYANSSP---INPFLNGFHSAAAAAAG 060
    |||    +  |  +  + | +|        |  |  +| |    | ||     ||||  |
168 PAPATAASTTS--SSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQ--EKAAAATGG 223

061 RGVYSNPDLVFAEAVSHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFY 120
     |  +          |  |+ |   ||+|         |      |     || ||+   
224 TGPGAGIGAATGTGGSSEPS-ACSDHPIP------GCSLKEEEKQHSQPQQQQLDPN--- 273

121 PWLIHRYRYLGHRFQGNDTSPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVV 180
                       +| +  +|   ||  ++ |  ++  | | ||  |  | |+ 
274 -------------------NPAANWIH---ARSTRKKRCPYTKYQTLELEKEFLFNMYLT 311

181 GAERKQLAHSLSLTETQVKVWFQNRRTKFKRQKLEE 216
       | ++|  |+||| |||+|||||| | |+   |+
312 RDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347