Affine Alignment
 
Alignment between FOXD1 (top ENST00000615637.3 465aa) and FOXD3 (bottom ENST00000371116.4 478aa) score 15200

001 MTLS--TEMSDASG----LAEETDIDVVGEGEDEEDEEEEDDDEGGGGGPRLAVPAQRRR 054
    ||||     || ||     ||+ ||||||||+|    ||+| | |               
001 MTLSGGGSASDMSGQTVLTAEDVDIDVVGEGDD--GLEEKDSDAGCD------------- 045

055 RRRSYAGEDELEDLEEEEDDDDILLAPPAGGSPAPPG------PAPAAGAGAGGGGG--- 105
       | ||  ||  |+|    |++  | |  | | ||       |  ||||||| ||    
046 ---SPAGPPELR-LDEA---DEVPPAAPHHGQPQPPHQQPLTLPKEAAGAGAGPGGDVGA 098

106 --------------GGGAGGGGSAGSGA---------KNPLVKPPYSYIALITMAILQSP 142
                  || +|||  ||||+         || ||||||||||||||||||||
099 PEADGCKGGVGGEEGGASGGGPGAGSGSAGGLAPSKPKNSLVKPPYSYIALITMAILQSP 158

143 KKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 202
    +|+|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
159 QKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 218

203 PESADMFDNGSFLRRRKRFKRQPLLPPNAAAAESLLLRGAGAAGGAGDPAAAAALFPPAP 262
    |+| |||||||||||||||||      +     +|+++  ||   |   || ||      
219 PQSEDMFDNGSFLRRRKRFKRHQ--QEHLREQTALMMQSFGAYSLAA--AAGAA------ 268

263 PPPPHAYGYGPYGCGYGLQLPPYAPPSAL---FAAAAAAAAAAAFHPHSPP------PPP 313
             ||||  |||   | |   |     ||||||||||  +|++ |      || 
269 ---------GPYGRPYGLH--PAAAAGAYSHPAAAAAAAAAAALQYPYALPPVAPVLPPA 317

314 PPHGAAAELAR--TAFGYRPHPLGAALPGPLPASAAKAGGPGASAL----------ARSP 361
     |   + || |   ||| +  |        | |+|| ||  ||+            ||  
318 VPLLPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGAAGTTASLIKSEPSARPS 377

362 FSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAA 421
    ||||+||||  ||||   +|  |  |                | ||||  ||+ + |   
378 FSIENIIGG--GPAAPGGSAVGAGVAG-------------GTGGSGGGSTAQSFLRPPGT 422

422 LTRSLVAAAAAAASSVSSSAALGTLHQGTALS 453
    +                 ||||   ||  +||
423 V----------------QSAALMATHQPLSLS 438