Affine Alignment
 
Alignment between BCL11A (top ENST00000642384.2 835aa) and BCL11B (bottom ENST00000357195.8 894aa) score 49780

001 MSRRKQGKPQHLSKRE-FSPEP---LEAILTDDE----PDHGPLGAPEG--DHDLLTCGQ 050
    ||||||| |||||+||  +||      ||| +||     +   ||   |  | |||||||
001 MSRRKQGNPQHLSQRELITPEADHVEAAILEEDEGLEIEEPSGLGLMVGGPDPDLLTCGQ 060

051 CQMNFPLGDILIFIEHKRKQCNGSL--CLEKAVDK--PPSPSPIEMKKASNPVEVGIQVT 106
    |||||||||||+||||||||| |||  | +||+||  ||  |  |++| | |||+|||||
061 CQMNFPLGDILVFIEHKRKQCGGSLGACYDKALDKDSPPPSSRSELRKVSEPVEIGIQVT 120

107 PEDDDCLSTSSRGICPKQEHIADKLL----------------HWRGLSSPRSAHGALIP- 149
    |++|| | + ++|||||||+||                    |   ++||  | ||| | 
121 PDEDDHLLSPTKGICPKQENIAGPCRPAQLPAVAPIAASSHPHSSVITSPLRALGALPPC 180

150 ---------------TPGMSAEYAPQGI-C----KDEPSSYTCTTCKQPFTSAWFLLQHA 189
                   | |     || |  |    ||||||| |||||||| |||||||||
181 LPLPCCSARPVSGDGTQGEGQTEAPFGCQCQLSGKDEPSSYICTTCKQPFNSAWFLLQHA 240

190 QNTHGLRIYLE-SEHGSPLTPRVGIPSGLGAECPSQPPLHGIHIADNNPFNLLRIPGSVS 248
    ||||| |||||     | ||||+ ||  || |  +| ||    + |+|||||||+ | + 
241 QNTHGFRIYLEPGPASSSLTPRLTIPPPLGPEAVAQSPLMNF-LGDSNPFNLLRMTGPIL 299

249 REASGLAEGRFPPTPPLFSPPPRHHLDPHRIERLGAEEMALATHHPSAFDRVLRLNPMAM 308
    |+  |  ||| | ||||||||||||||||   || |||| |   ||||||||+||||||+
300 RDHPGFGEGRLPGTPPLFSPPPRHHLDPH---RLSAEEMGLVAQHPSAFDRVMRLNPMAI 356

309 EPPAMDFSRRLRELAGNTSS-PPLSPGRPSPMQRLLQPFQPGSKPPFLATPPLPPL-QSA 366
    + |||||||||||||||+|+ ||+|||| +|| ||| ||||  | |||+||||||+    
357 DSPAMDFSRRLRELAGNSSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMPPGG 416

367 PPPSQPPVKSKSCEFCGKTFKFQSNLVVHRRSHTGEKPYKCNLCDHACTQASKLKRHMKT 426
     || ||| ||||||||||||||||||+|||||||||||||| ||||||+|||||||||||
417 TPPPQPPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRHMKT 476

427 HMHKSSPMTVKSDDGLSTASSPEPGTSDLVGSASSALKSVVAKFK-SENDPNLIPENGDE 485
    ||||+  +  +|||||| |||||||||+| |     ||+    |+  |+||+|    | |
477 HMHKAGSLAGRSDDGLSAASSPEPGTSELAG---EGLKAADGDFRHHESDPSL----GHE 529

486 EEEEDDEEEEEEEEEEEEELTESE-RVDYGFGLSLEAARHHENSSRGAVVGV----GDES 540
     ||||    ||||||||| | |+| | +  | +  | +|+ ||   | | ||    |  +
530 PEEED----EEEEEEEEELLLENESRPESSFSMDSELSRNRENGG-GGVPGVPGAGGGAA 584

541 RALPD--------VMQGMVLSSMQHFSEAFHQVLGEKHKRG-HLAEAEGHRDTCDEDSVA 591
    +|| |        ||+ + | ++  + |    +| +| |||  |  | |  |  |+|   
585 KALADEKALVLGKVMENVGLGALPQYGE----LLADKQKRGAFLKRAAGGGDAGDDDDAG 640

592 GESDRIDDGTVNGR--GCSPGESASGGLSKKLLLGSPS-SLSPFSKRIKLEKEFDLPPAA 648
    |  |    | ||||  | +||     ||  +     ||  |+  +||||+||+ +|||||
641 GCGDAGAGGAVNGRGGGFAPGTEPFPGLFPRKPAPLPSPGLNSAAKRIKVEKDLELPPAA 700

649 MPNTENVYSQWLAGYAASRQ-LKDPFLSFGDSRQSPFASSSEHSSENGSLRFSTPPGE-L 706
    +  +|||||||| ||||||  +||||| | |+||||||+||||||||||||||||||+ |
701 LIPSENVYSQWLVGYAASRHFMKDPFLGFTDARQSPFATSSEHSSENGSLRFSTPPGDLL 760

707 DGGISGRSGTGSGGSTPHISGPGPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTG 766
    |||+|||||| |||||||+ ||||||||||||||||||||||||||||||||||||||||
761 DGGLSGRSGTASGGSTPHLGGPGPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTG 820

767 ERPYKCELCNYACAQSSKLTRHMKTHGQVGKDVYKCEICKMPFSVYSTLEKHMKKWHSDR 826
    ||||||||||||||||||||||||||||+||+||+|+||+||||||||||||||||| + 
821 ERPYKCELCNYACAQSSKLTRHMKTHGQIGKEVYRCDICQMPFSVYSTLEKHMKKWHGEH 880

827 VLNNDIKTE 835
    +| ||+| |
881 LLTNDVKIE 889