Affine Alignment
 
Alignment between HOXA13 (top ENST00000649031.1 388aa) and HOXD13 (bottom ENST00000392539.4 343aa) score 13509

053 AGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEA 112
    | |||        |||  + +++++ |||||+ |||  ++  ||+  |  |      | |
014 ADGGG--------AGGAPASSSSSSVAAAAASGQCRGFLS--APVFAGTHS------GRA 057

113 PPSAAAAAAAAAAAAAAA---------AAASSSGGPGPAGPAGAEAAKQC---SPCSAAA 160
      +|||||||||||+  |         +++|||     |    |  ||+|   +| +|||
058 AAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAA 117

161 QSSSGPAALPYGY-FGSGYYPCAR---MGPHPNAIKSCAQPASAAAAAAFADKYMDTAGP 216
       | | || ||| ||+||| |     +|   ||+||      |+      +|||| +| 
118 APPSAP-ALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPH---ASLGGFPVEKYMDVSGL 173

217 A-----AEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGL 271
    |     | |  +|||| +|| ||| + || |   +|||+||       | || |||   +
174 ASSSVPANEVPARAKEVSFY-QGYTS-PYQH---VPGYIDM---VSTFGSGEPRHEAY-I 224

272 PMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYT 330
     || || | | |||| |+|| |+| |  | |||+ | ||  +  |   ||||||||||||
225 SMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYT 284

331 KVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTT 387
    |+|||||| ||| |||| ||||||||| ||||||||||||||||||+||+++||| |
285 KLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDT 341