Affine Alignment
 
Alignment between FOXC2 (top ENST00000649859.1 501aa) and FOXS1 (bottom ENST00000375978.5 330aa) score 9044

064 PAAP-KDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRH 122
    | ||  +  |||||||||| ||||++| ++ ||+|||++|| || ||| |+ ||||||||
009 PGAPTTEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRH 068

123 NLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVSKEKEERAH 182
    |||||||||||||||+||||||||||||| ++|||+|||||||||| ++  ++     | 
069 NLSLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFEHGSFLRRRRRFTRQTGAEGTRGPAK 128

183 LKEPPPAASKGAPATPHLADA-----PKEAEKKVVIKSEAASPALPVITKVETLSPESAL 237
     +  |  |+   |  |+         | |      +       |+|      ++ | +  
129 ARRGPLRATSQDPGVPNATTGRQCSFPPELPDPKGLSFGGLVGAMPA-----SMCP-ATT 182

238 QGSPR-----SAASTPAGSPDGSLPEHHAAAPNGLPGFSVENIMTLRTSPPGGELSPGAG 292
     | ||        |||  +  | ||   | + +  | |           | |   +    
183 DGRPRPPMEPKEISTPKPACPGELPV--ATSSSSCPAFGF---------PAGFSEAESFN 231

293 RAGLVVPPLALPYAAAPPAAYGQPCAQGLEAGAAGGYQCSMRAMSLYTGAERPAHMCVPP 352
    +|     |+  |                 |+|    ||| ++|++   ||+        |
232 KA---PTPVLSP-----------------ESGIGSSYQCRLQALNFCMGAD--------P 263

353 ALDEALSD---HPSGPTSP 368
     |+  |+     |+ || |
264 GLEHLLASAAPSPAPPTPP 282