UCSC Human Gene Sorter
 
genome assembly search
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#
Name
VisiGene
BLASTP
E-Value
Genome Position
Description
1TNIP3n/a
n/a
n/a
n/a
1e-147chr4 121,147,864TNFAIP3 interacting protein 3, transcript variant 1 (from RefSeq NM_024873.6)
2SCAT1n/a
n/a
n/a
n/a
n/achr17 78,620,016SCAT1 (from geneSymbol)
3ENSG00000235419n/a
n/a
n/a
n/a
n/achr2 230,550,300ENSG00000235419 (from geneSymbol)
4E2F3P1n/a
    
    
     
n/achr17 35,490,623E2F transcription factor 3 pseudogene 1 (from HGNC E2F3P1)
5PLEKHA3P1n/a
    
    
     
n/achr19 41,521,516pleckstrin homology domain containing A3 pseudogene 1 (from HGNC PLEKHA3P1)
6CDC6n/a
n/a
n/a
n/a
n/achr17 40,296,268cell division cycle 6 (from RefSeq NM_001254.4)
7OR2B6n/a
    
    
     
n/achr6 27,957,711olfactory receptor family 2 subfamily B member 6 (from RefSeq NM_012367.1)
8USP41Pn/a
n/a
n/a
n/a
n/achr22 20,370,436USP41P (from geneSymbol)
9ENSG00000233755n/a
    
    
     
n/achr1 25,078,413ENSG00000233755 (from geneSymbol)
10LINC01934n/a
n/a
n/a
n/a
n/achr2 181,266,579long intergenic non-protein coding RNA 1934 (from RefSeq NR_130784.1)
11MAF1P1n/a
    
    
     
n/achr3 133,491,164MAF1P1 (from geneSymbol)
12CYP26C1n/a
n/a
n/a
n/a
n/achr10 93,065,169cytochrome P450 family 26 subfamily C member 1 (from RefSeq NM_183374.3)
13ENSG00000285846n/a
n/a
n/a
n/a
n/achr10 93,070,535ENSG00000285846 (from geneSymbol)
14LINC02898n/a
n/a
n/a
n/a
n/achr2 41,947,447LINC02898 (from geneSymbol)
15ENSG00000262703n/a
    
    
     
n/achr16 11,348,732ENSG00000262703 (from geneSymbol)
16ATP5MC2P3n/a
    
    
     
n/achr2 197,263,323ATP synthase membrane subunit c locus 2 pseudogene 3 (from HGNC ATP5MC2P3)
17LINC02405n/a
n/a
n/a
n/a
n/achr12 126,987,800long intergenic non-protein coding RNA 2405 (from RefSeq NR_104646.1)
18GPR89Pn/a
    
    
     
n/achr6 27,737,747G protein-coupled receptor 89 pseudogene (from HGNC GPR89P)
19ARB2BPn/a
n/a
n/a
n/a
n/achr3 101,522,435ARB2BP (from geneSymbol)
20ENSG00000250645n/a
    
    
     
n/achr5 418,906ENSG00000250645 (from geneSymbol)
21ENSG00000231881n/a
    
    
     
n/achr6 44,074,040ENSG00000231881 (from geneSymbol)
22ENSG00000258760n/a
    
    
     
n/achr14 65,269,580ENSG00000258760 (from geneSymbol)
23Y_RNAn/a
    
    
     
n/achr17 40,391,285Y_RNA (from geneSymbol)
24TRGV1n/a
    
    
     
n/achr7 38,367,877Probable non-functional open reading frame (ORF) of V region  of the variable domain of T cell receptor (TR) gamma chain  (PubMed:24600447). Non-functional ORF generally cannot participate in  the synthesis of a productive T cell receptor (TR) chain due to altered  V-(D)-J or switch recombination and/or splicing site (at mRNA level)  and/or conserved amino acid change (protein level) (PubMed:9619395).  Gamma-delta TRs recognize a variety of self and foreign non-peptide  antigens frequently expressed at the epithelial boundaries between the  host and external environment, including endogenous lipids presented by  MH-like protein CD1D and phosphoantigens presented by butyrophilin-like  molecule BTN3A1. Upon antigen recognition induces rapid, innate-like  immune responses involved in pathogen clearance and tissue repair  (PubMed:23348415, PubMed:28920588). Binding of gamma-delta TR complex  to antigen triggers phosphorylation of immunoreceptor tyrosine-based  activation motifs (ITAMs) in the CD3 chains by the LCK and FYN kinases,  allowing the recruitment, phosphorylation, and activation of ZAP70 that  facilitates phosphorylation of the scaffolding proteins LCP2 and LAT.  This lead to the formation of a supramolecular signalosome that  recruits the phospholipase PLCG1, resulting in calcium mobilization and  ERK activation, ultimately leading to T cell expansion and  differentiation into effector cells (PubMed:25674089). Gamma-delta TRs  are produced through somatic rearrangement of a limited repertoire of  variable (V), diversity (D), and joining (J) genes. The potential  diversity of gamma-delta TRs is conferred by the unique ability to  rearrange (D) genes in tandem and to utilize all three reading frames.  The combinatorial diversity is considerably increased by the sequence  exonuclease trimming and random nucleotide (N) region additions which  occur during the V-(D)-J rearrangements (PubMed:24387714). (from UniProt A0A0A0MS02)
25CENPUP2n/a
    
    
     
n/achr12 25,093,307centromere protein U pseudogene 2 (from HGNC CENPUP2)
26ENSG00000279846n/a
n/a
n/a
n/a
n/achr15 99,498,093ENSG00000279846 (from geneSymbol)
27RNU2-6Pn/a
    
    
     
n/achr13 46,374,495RNA, U2 small nuclear 6, pseudogene (from HGNC RNU2-6P)
28LINC02642n/a
    
    
     
n/achr10 7,458,100long intergenic non-protein coding RNA 2642, transcript variant 12 (from RefSeq NR_184124.1)
29ENSG00000260303n/a
    
    
     
n/achr4 146,054,683ENSG00000260303 (from geneSymbol)
30ENSG00000225885n/a
n/a
n/a
n/a
n/achr8 118,345,906ENSG00000225885 (from geneSymbol)
31BNIP3P41n/a
n/a
n/a
n/a
n/achr4 49,839BCL2 interacting protein 3 pseudogene 41 (from HGNC BNIP3P41)
32ENSG00000292991n/a
n/a
n/a
n/a
n/achr4 49,526ENSG00000292991 (from geneSymbol)
33ATF4P3n/a
    
    
     
n/achr17 76,226,278activating transcription factor 4 pseudogene 3 (from HGNC ATF4P3)
34ENSG00000236941n/a
n/a
n/a
n/a
n/achr4 164,948,758ENSG00000236941 (from geneSymbol)
35OR2W6Pn/a
    
    
     
n/achr6 27,937,934olfactory receptor family 2 subfamily W member 6 pseudogene (from HGNC OR2W6P)
36NCR2n/a
n/a
n/a
n/a
n/achr6 41,343,248natural cytotoxicity triggering receptor 2, transcript variant 1 (from RefSeq NM_004828.4)
37SEPTIN14P21n/a
n/a
n/a
n/a
n/achr1 243,047,786SEPTIN14P21 (from geneSymbol)
38ENSG00000291216n/a
n/a
n/a
n/a
n/achr1 243,038,668ENSG00000291216 (from geneSymbol)
39LINC02909n/a
n/a
n/a
n/a
n/achr12 25,000,733LINC02909 (from geneSymbol)
40ENSG00000268289n/a
    
    
     
n/achr19 17,053,540ENSG00000268289 (from geneSymbol)
41TPM3P8n/a
    
    
     
n/achr2 230,573,488tropomyosin 3 pseudogene 8 (from HGNC TPM3P8)
42RPL12P38n/a
    
    
     
n/achr17 60,433,967ribosomal protein L12 pseudogene 38 (from HGNC RPL12P38)
43ENSG00000256988n/a
    
    
     
n/achr12 4,817,638ENSG00000256988 (from geneSymbol)
44ENSG00000293252n/a
    
    
     
n/achr17 60,434,837ENSG00000293252 (from geneSymbol)
45GLYATL1Bn/a
    
    
     
n/achr11 59,090,546glycine-N-acyltransferase like 1B (from RefSeq NM_001355566.1)
46BNIP3P43n/a
    
    
     
n/achr21 13,120,525BNIP3P43 (from geneSymbol)
47HCCS-DTn/a
n/a
n/a
n/a
n/achrX 10,979,399HCCS divergent transcript, transcript variant 1 (from RefSeq NR_186561.1)
48LINC02325n/a
    
    
     
n/achr14 97,504,358long intergenic non-protein coding RNA 2325 (from HGNC LINC02325)
49LINC01684n/a
    
    
     
n/achr21 24,418,852long intergenic non-protein coding RNA 1684 (from HGNC LINC01684)
50GOLM2P1n/a
    
    
     
n/achr13 19,564,244GOLM2P1 (from geneSymbol)