UCSC Human Gene Sorter
 
genome assembly search
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#
Name
VisiGene
BLASTP
E-Value
Genome Position
Description
1RUNX3-AS1n/a
    
    
     
n/achr1 24,962,221RUNX3-AS1 (from geneSymbol)
2E2F3P1n/a
    
    
     
n/achr17 35,490,623E2F transcription factor 3 pseudogene 1 (from HGNC E2F3P1)
3ENSG00000235419n/a
n/a
n/a
n/a
n/achr2 230,550,300ENSG00000235419 (from geneSymbol)
4MAF1P1n/a
    
    
     
n/achr3 133,491,164MAF1P1 (from geneSymbol)
5PEBP1P3n/a
    
    
     
n/achr1 198,679,586phosphatidylethanolamine binding protein 1 pseudogene 3 (from HGNC PEBP1P3)
6ENSG00000260303n/a
    
    
     
n/achr4 146,054,683ENSG00000260303 (from geneSymbol)
7TRGV1n/a
    
    
     
n/achr7 38,367,877Probable non-functional open reading frame (ORF) of V region  of the variable domain of T cell receptor (TR) gamma chain  (PubMed:24600447). Non-functional ORF generally cannot participate in  the synthesis of a productive T cell receptor (TR) chain due to altered  V-(D)-J or switch recombination and/or splicing site (at mRNA level)  and/or conserved amino acid change (protein level) (PubMed:9619395).  Gamma-delta TRs recognize a variety of self and foreign non-peptide  antigens frequently expressed at the epithelial boundaries between the  host and external environment, including endogenous lipids presented by  MH-like protein CD1D and phosphoantigens presented by butyrophilin-like  molecule BTN3A1. Upon antigen recognition induces rapid, innate-like  immune responses involved in pathogen clearance and tissue repair  (PubMed:23348415, PubMed:28920588). Binding of gamma-delta TR complex  to antigen triggers phosphorylation of immunoreceptor tyrosine-based  activation motifs (ITAMs) in the CD3 chains by the LCK and FYN kinases,  allowing the recruitment, phosphorylation, and activation of ZAP70 that  facilitates phosphorylation of the scaffolding proteins LCP2 and LAT.  This lead to the formation of a supramolecular signalosome that  recruits the phospholipase PLCG1, resulting in calcium mobilization and  ERK activation, ultimately leading to T cell expansion and  differentiation into effector cells (PubMed:25674089). Gamma-delta TRs  are produced through somatic rearrangement of a limited repertoire of  variable (V), diversity (D), and joining (J) genes. The potential  diversity of gamma-delta TRs is conferred by the unique ability to  rearrange (D) genes in tandem and to utilize all three reading frames.  The combinatorial diversity is considerably increased by the sequence  exonuclease trimming and random nucleotide (N) region additions which  occur during the V-(D)-J rearrangements (PubMed:24387714). (from UniProt A0A0A0MS02)
8PLEKHA3P1n/a
    
    
     
n/achr19 41,521,516pleckstrin homology domain containing A3 pseudogene 1 (from HGNC PLEKHA3P1)
9SCAT1n/a
n/a
n/a
n/a
n/achr17 78,620,016SCAT1 (from geneSymbol)
10OR2B6n/a
    
    
     
n/achr6 27,957,711olfactory receptor family 2 subfamily B member 6 (from RefSeq NM_012367.1)
11GOLM2P1n/a
    
    
     
n/achr13 19,564,244GOLM2P1 (from geneSymbol)
12RPL12P42n/a
    
    
     
n/achr19 13,158,373ribosomal protein L12 pseudogene 42 (from HGNC RPL12P42)
13ENSG00000248571n/a
    
    
     
n/achr4 152,668,237ENSG00000248571 (from geneSymbol)
14GLYATL1Bn/a
    
    
     
n/achr11 59,090,546glycine-N-acyltransferase like 1B (from RefSeq NM_001355566.1)
15ENSG00000258878n/a
    
    
     
n/achr14 65,234,808ENSG00000258878 (from geneSymbol)
16TNIP3n/a
n/a
n/a
n/a
n/achr4 121,147,864TNFAIP3 interacting protein 3, transcript variant 1 (from RefSeq NM_024873.6)
17BACH1-IT2n/a
n/a
n/a
n/a
n/achr21 29,372,328BACH1 intronic transcript 2 (from HGNC BACH1-IT2)
18ENSG00000233755n/a
    
    
     
n/achr1 25,078,413ENSG00000233755 (from geneSymbol)
19ENSG00000262703n/a
    
    
     
n/achr16 11,348,732ENSG00000262703 (from geneSymbol)
20RNU2-6Pn/a
    
    
     
n/achr13 46,374,495RNA, U2 small nuclear 6, pseudogene (from HGNC RNU2-6P)
21SSX6Pn/a
n/a
n/a
n/a
n/achrX 48,114,805SSX6P (from geneSymbol)
22ENSG00000291285n/a
n/a
n/a
n/a
n/achrX 48,111,151ENSG00000291285 (from geneSymbol)
23ENSG00000228403n/a
    
    
     
n/achr10 48,878,335ENSG00000228403 (from geneSymbol)
24ANTXRLP1n/a
n/a
n/a
n/a
n/achr10 46,253,721anthrax toxin receptor-like pseudogene 1 (from HGNC ANTXRLP1)
25ATP5MC2P3n/a
    
    
     
n/achr2 197,263,323ATP synthase membrane subunit c locus 2 pseudogene 3 (from HGNC ATP5MC2P3)
26ENSG00000250645n/a
    
    
     
n/achr5 418,906ENSG00000250645 (from geneSymbol)
27CENPUP2n/a
    
    
     
n/achr12 25,093,307centromere protein U pseudogene 2 (from HGNC CENPUP2)
28ENSG00000261267n/a
    
    
     
n/achr16 48,573,532ENSG00000261267 (from geneSymbol)
29TCF3P1n/a
    
    
     
n/achr9 5,111,881transcription factor 3 pseudogene 1 (from HGNC TCF3P1)
30LINC01572n/a
n/a
n/a
n/a
n/achr16 72,473,577long intergenic non-protein coding RNA 1572, transcript variant 1 (from RefSeq NR_126330.2)
31EIF1P4n/a
    
    
     
n/achr16 2,822,826eukaryotic translation initiation factor 1 pseudogene 4 (from HGNC EIF1P4)
32HNRNPA1P70n/a
    
    
     
n/achr12 68,036,310heterogeneous nuclear ribonucleoprotein A1 pseudogene 70 (from HGNC HNRNPA1P70)
33Y_RNAn/a
    
    
     
n/achr17 40,391,285Y_RNA (from geneSymbol)
34ENSG00000235140n/a
    
    
     
n/achr10 59,622,648ENSG00000235140 (from geneSymbol)
35ENSG00000267016n/a
    
    
     
n/achr17 77,470,966ENSG00000267016 (from geneSymbol)
36BNIP3P41n/a
n/a
n/a
n/a
n/achr4 49,839BCL2 interacting protein 3 pseudogene 41 (from HGNC BNIP3P41)
37ENSG00000292991n/a
n/a
n/a
n/a
n/achr4 49,526ENSG00000292991 (from geneSymbol)
38SLC25A1P1n/a
    
    
     
n/achr11 85,935,200solute carrier family 25 member 1 pseudogene 1 (from HGNC SLC25A1P1)
39ENSG00000218713n/a
    
    
     
n/achr6 53,207,647ENSG00000218713 (from geneSymbol)
40LINC02390n/a
    
    
     
n/achr12 9,706,713long intergenic non-protein coding RNA 2390 (from HGNC LINC02390)
41RN7SL32Pn/a
n/a
n/a
n/a
n/achr2 233,205,339RNA, 7SL, cytoplasmic 32, pseudogene (from HGNC RN7SL32P)
42CHCHD4P2n/a
    
    
     
n/achr9 108,097,641coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 2 (from HGNC CHCHD4P2)
43ARB2BPn/a
n/a
n/a
n/a
n/achr3 101,522,435ARB2BP (from geneSymbol)
44GPR89Pn/a
    
    
     
n/achr6 27,737,747G protein-coupled receptor 89 pseudogene (from HGNC GPR89P)
45RRN3P4n/a
    
    
     
n/achr2 142,855,046RRN3P4 (from geneSymbol)
46LINC02325n/a
    
    
     
n/achr14 97,504,358long intergenic non-protein coding RNA 2325 (from HGNC LINC02325)
47ENSG00000239374n/a
    
    
     
n/achr12 116,755,634ENSG00000239374 (from geneSymbol)
48PAX4n/a
n/a
n/a
n/a
n/achr7 127,614,217paired box 4, transcript variant 1 (from RefSeq NM_001366110.1)
49ENSG00000255092n/a
    
    
     
n/achr11 44,607,135ENSG00000255092 (from geneSymbol)
50ENSG00000225885n/a
n/a
n/a
n/a
n/achr8 118,345,906ENSG00000225885 (from geneSymbol)