UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F10A3.1	F10A3.1	3e-82	chrV 16,140,754	F10A3.1 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; F10A3.1 is worm-specific, with obvious homologs only in C. elegans; F10A3.1 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.
2	M151.3	M151.3	n/a	chrII 3,629,023	contains similarity to Homo sapiens Isoform 2 of Girdin; ENSEMBL:ENSP00000263630
3	C48B6.9	C48B6.9	n/a	chrI 6,924,938	contains similarity to Interpro domain IPR000366 (Fungal pheromone mating factor STE2 GPCR)
4	F40G9.7	F40G9.7	n/a	chrIII 165,986
5	fbxb-67	F49B2.2	n/a	chrI 14,297,764	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
6	R11A5.3	R11A5.3	n/a	chrI 7,863,191	contains similarity to Mycobacterium tuberculosis DNA-binding protein HU homolog (Histone-like protein) (Hlp) (21-kDaslaminin-2-binding protein).; SW:DBH_MYCTU
7	Y40B1B.7	Y40B1B.7	n/a	chrI 13,427,466	contains similarity to Rattus norvegicus Coiled-coil domain-containing protein 86 (Cytokine-induced proteinswith coiled-coil domain).; SW:Q5XIB5
8	T27A1.2	T27A1.2	n/a	chrII 532,038	contains similarity to Pfam domain PF07735 F-box associated contains similarity to Interpro domain IPR012885 (F-box associated type 2)
9	his-74	W05B10.1	n/a	chrV 12,659,997	C. elegans HIS-74 protein; contains similarity to Pfam domain PF00125 Core histone H2A/H2B/H3/H4 contains similarity to Interpro domains IPR000164 (Histone H3), IPR009072 (Histone-fold), IPR007125 (Histone core)
10	vet-6	F44F1.7	n/a	chrI 13,271,377	vet-6 encodes a protein that contains a spectrin repeat; vet-6 is preferentially transcribed in embryos prior to gastrulation.
11	C08H9.7	C08H9.7	n/a	chrII 9,860,547	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)
12	Y116A8C.20	Y116A8C.20	n/a	chrIV 17,041,175	Y116A8C.20 encodes a CCCH tandem zinc finger (TZF) protein; based upon its sequence similarity to C. elegans POS-1, the product of Y116A8C.20 is predicted to function as an RNA-binding protein.
13	mdt-22	ZK970.3	n/a	chrII 10,301,446	C. elegans MDT-22 protein; contains similarity to Pfam domain PF06179 Surfeit locus protein 5 contains similarity to Interpro domain IPR009332 (Surfeit locus 5)
14	T25B9.8	T25B9.8	n/a	chrIV 10,767,369	contains similarity to Interpro domain IPR003006 (Immunoglobulin/major histocompatibility complex, conserved site)
15	bath-9	Y49F6C.3	n/a	chrII 3,377,880	C. elegans BATH-9 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain) , PF00917 (MATH domain) contains similarity to Interpro domains IPR002083 (MATH), IPR000210 (BTB/POZ-like), IPR010916 (TonB box, conserved site), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
16	C02B8.2	C02B8.2	n/a	chrX 8,144,673
17	T08D2.7	T08D2.7	n/a	chrX 186,625	contains similarity to Pfam domains PF00069 (Protein kinase domain) , PF00498 (FHA domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR008984 (SMAD/FHA domain), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000253 (Forkhead-associated)
18	M110.3	M110.3	n/a	chrII 8,215,496	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR011016 (Zinc finger, variant RING-type)
19	T24C2.2	T24C2.2	n/a	chrX 14,546,208	contains similarity to Fusobacterium nucleatum Hypothetical protein FN0465.; TR:Q8RG53
20	C13F10.5	C13F10.5	n/a	chrV 7,217,043	contains similarity to Homo sapiens Isoform 2 of Uncharacterized protein C6orf64; ENSEMBL:ENSP00000362346
21	Y106G6H.15	Y106G6H.15	n/a	chrI 10,473,965	contains similarity to Pfam domain PF07160 Protein of unknown function (DUF1395) contains similarity to Interpro domain IPR009829 (Protein of unknown function DUF1395)
22	C48B6.3	C48B6.3	n/a	chrI 6,915,508	contains similarity to Homo sapiens UPF0472 protein C16orf72; ENSEMBL:ENSP00000331720
23	lem-2	W01G7.5	n/a	chrII 14,064,559	C. elegans LEM-2 protein; contains similarity to Pfam domain PF03020 LEM domain contains similarity to Interpro domains IPR013142 (LEM-like region), IPR003887 (Lamino-associated polypeptide 2/emerin), IPR011015 (LEM-like fold)
24	C17E4.2	C17E4.2	n/a	chrI 9,413,650	contains similarity to Trichomonas vaginalis G3 Viral A-type inclusion protein, putative.; TR:A2EJ43
25	kbp-5	C34B2.2	n/a	chrI 10,687,701	C. elegans KBP-5 protein ;
26	ced-8	F08F1.5	n/a	chrX 8,415,405	The ced-8 gene encodes a homolog of the human putative membrane transporter XK; ced-8 is required for apoptosis to occur with normal speed during embryonic development.
27	T20F10.4	T20F10.4	n/a	chrI 10,305,153	contains similarity to Streptococcus mutans Putative 16S rRNA processing protein.; TR:Q8DUN7
28	W02D7.5	W02D7.5	n/a	chrV 8,298,506	contains similarity to Interpro domain IPR016181 (Acyl-CoA N-acyltransferase)
29	W06D11.2	W06D11.2	n/a	chrX 12,296,301
30	C49F5.3	C49F5.3	n/a	chrX 11,983,268	contains similarity to Phytophthora infestans SECY-independent transporter protein.; TR:Q9T238
31	F36H12.2	F36H12.2	n/a	chrIV 5,275,375
32	C17H12.2	C17H12.2	n/a	chrIV 6,788,223	contains similarity to Drosophila melanogaster Flybase gene name is CG7289-PA;; FLYBASE:CG7289
33	F22D3.5	F22D3.5	n/a	chrII 6,938,664
34	F42A6.5	F42A6.5	n/a	chrIV 3,331,304	contains similarity to Interpro domain IPR001357 (BRCT)
35	F44A6.3	F44A6.3	n/a	chrX 10,213,400	contains similarity to Human parainfluenza 1 virus RNA polymerase alpha subunit (EC 2.7.7.48) (Nucleocapsidsphosphoprotein).; SW:RRPP_PI1HB
36	kup-1	F10C2.2	n/a	chrV 12,036,541	kup-1 encodes a novel protein that is conserved in C. briggsae, but contains no other known homologs; kup-1 is the upstream gene in an operon with pkc-1, which encodes two protein kinase C isoforms of the nPKC isotype; the polycistronic kup-1/pkc-1 mRNA is detected at low levels in embryos and larvae, but its expression greatly increases in adults; as loss of kup-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kup-1 in C. elegans development and/or behavior is not yet known.
37	M01E11.1	M01E11.1	n/a	chrI 5,582,772	contains similarity to Pfam domain PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family contains similarity to Interpro domain IPR007269 (Isoprenylcysteine carboxyl methyltransferase)
38	T08E11.5	T08E11.5	n/a	chrII 1,822,035
39	cic-1	H14E04.5	n/a	chrIII 2,397,836	C. elegans CIC-1 protein; contains similarity to Pfam domain PF00134 Cyclin, N-terminal domain contains similarity to Interpro domains IPR006670 (Cyclin), IPR011028 (Cyclin-like), IPR013763 (Cyclin-related), IPR006671 (Cyclin, N-terminal), IPR015429 (Transcription regulator cyclin)
40	F14B8.2	F14B8.2	n/a	chrX 6,904,852
41	wee-1.1	F35H8.7	n/a	chrII 9,582,677	C. elegans WEE-1.1 protein; contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
42	srbc-32	C02A12.5	n/a	chrV 3,486,251	C. elegans SRBC-32 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
43	T12F5.2	T12F5.2	n/a	chrI 3,732,139
44	ZC477.7	ZC477.7	n/a	chrIV 7,110,897
45	Y75B8A.18	Y75B8A.18	n/a	chrIII 12,226,253	contains similarity to Homo sapiens Splice isoform 1 of Q03001 Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8; ENSEMBL:ENSP00000281662
46	B0281.8	B0281.8	n/a	chrII 2,312,169	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR000315 (Zinc finger, B-box), IPR013083 (Zinc finger, RING/FYVE/PHD-type)
47	srx-48	T26H8.2	n/a	chrV 15,303,024	C. elegans SRX-48 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
48	T23G11.4	T23G11.4	n/a	chrI 7,694,776	contains similarity to Pfam domain PF07052 Hepatocellular carcinoma-associated antigen 59 contains similarity to Interpro domain IPR010756 (Hepatocellular carcinoma-associated antigen 59)
49	T22C8.4	T22C8.4	n/a	chrII 8,623,075	contains similarity to Interpro domains IPR003656 (Zinc finger, BED-type predicted), IPR007087 (Zinc finger, C2H2-type)
50	B0564.2	B0564.2	n/a	chrIV 13,107,893	contains similarity to Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily contains similarity to Interpro domain IPR005123 (2OG-Fe(II) oxygenase)