UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T04B2.5	T04B2.5	0	chrIV 10,057,860	contains similarity to Pfam domain PF01734 Patatin-like phospholipase contains similarity to Interpro domains IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase), IPR002641 (Patatin)
2	nhr-79	T26H2.9	n/a	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
3	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
4	ttr-11	F46B3.3	n/a	chrV 20,599,260	C. elegans TTR-11 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
5	K08D8.3	K08D8.3	n/a	chrIV 12,905,268	contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domains IPR000859 (CUB), IPR003366 (CUB-like region)
6	T11A5.6	T11A5.6	n/a	chrV 9,884,090	contains similarity to Pfam domain PF00648 Calpain family cysteine protease contains similarity to Interpro domains IPR001300 (Peptidase C2, calpain), IPR001876 (Zinc finger, RanBP2-type)
7	cyp-13A5	T10B9.2	n/a	chrII 9,799,242	C. elegans CYP-13A5 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II), IPR002403 (Cytochrome P450, E-class, group IV), IPR002397 (Cytochrome P450, B-class)
8	F20D1.3	F20D1.3	n/a	chrX 14,977,334	contains similarity to Interpro domains IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR000018 (P2Y4 purinoceptor), IPR015915 (Kelch-type beta propeller)
9	C54C8.3	C54C8.3	n/a	chrI 12,447,783	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
10	dnj-9	F11G11.7	n/a	chrII 4,854,916	This gene encodes a protein containing a DnaJ ('J') domain.
11	F40F8.4	F40F8.4	n/a	chrII 11,139,746	contains similarity to Interpro domain IPR001680 (WD40 repeat)
12	Y39A3A.4	Y39A3A.4	n/a	chrIII 2,074,752	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
13	fbxa-186	F47H4.6	n/a	chrV 17,337,347	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
14	F35F10.11	F35F10.11	n/a	chrV 3,311,123	contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011022 (Arrestin-like, C-terminal), IPR000694 (Proline-rich region), IPR011021 (Arrestin-like, N-terminal)
15	F48G7.10	F48G7.10	n/a	chrV 634,518	contains similarity to Pfam domain PF00130 Phorbol esters/diacylglycerol binding domain (C1 domain) contains similarity to Interpro domains IPR015727 (Protein kinase C mu-related), IPR002219 (Protein kinase C, phorbol ester/diacylglycerol binding)
16	F15A8.4	F15A8.4	n/a	chrX 4,408,576
17	T20G5.4	T20G5.4	n/a	chrIII 10,213,504	contains similarity to Pfam domain PF01062 Bestrophin contains similarity to Interpro domain IPR000615 (Bestrophin)
18	ins-21	M04D8.1	n/a	chrIII 10,023,858	ins-21 encodes an insulin-like peptide.
19	F20A1.4	F20A1.4	n/a	chrV 7,020,334
20	C04E6.7	C04E6.7	n/a	chrV 5,894,251	contains similarity to Pfam domain PF00702 haloacid dehalogenase-like hydrolase contains similarity to Interpro domains IPR011945 (Predicted HAD-superfamily phosphatase, subfamily IA/Epoxide hydrolase, N-terminal), IPR005833 (Haloacid dehydrogenase/epoxide hydrolase), IPR006402 (HAD-superfamily hydrolase, subfamily IA, variant 3), IPR016059 (ATP-dependent DNA ligase, conserved site), IPR005834 (Haloacid dehalogenase-like hydrolase)
21	pax-3	F27E5.2	n/a	chrII 10,149,568	pax-3 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes; PAX-3 is required for locomotion and vulval development; pax-3(RNAi) animals have consistent Pvl and Unc phenotypes (as well as less consistent Bmd, Rup, and Stp phenotypes).
22	F01G10.5	F01G10.5	n/a	chrIV 10,229,551	contains similarity to Interpro domain IPR011072 (HR1 rho-binding repeat)
23	nhr-206	R07B7.13	n/a	chrV 12,092,930	C. elegans NHR-206 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
24	srt-47	Y41E3.12	n/a	chrIV 15,051,352	C. elegans SRT-47 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR002651 (Protein of unknown function DUF32), IPR006121 (Heavy metal transport/detoxification protein)
25	F19G12.4	F19G12.4	n/a	chrX 1,417,386
26	C34F6.7	C34F6.7	n/a	chrX 11,212,716	contains similarity to Drosophila melanogaster Flybase gene name is CG14646-PA;; FLYBASE:CG14646
27	nhr-36	F07C3.10	n/a	chrV 9,258,968	C. elegans NHR-36 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF01461 (7TM chemoreceptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR003002 (7TM chemoreceptor, subfamily 1), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
28	srab-11	C36C5.8	n/a	chrV 3,146,053	C. elegans SRAB-11 protein; contains similarity to Pfam domain PF02175 C.elegans integral membrane protein Srb contains similarity to Interpro domain IPR002184 (Serpentine beta receptor)
29	C32E8.3	C32E8.3	n/a	chrI 3,787,036	contains similarity to Pfam domain PF05517 p25-alpha contains similarity to Interpro domain IPR008907 (P25-alpha)
30	C05D11.5	C05D11.5	n/a	chrIII 6,410,742	contains similarity to Pfam domain PF01261 Xylose isomerase-like TIM barrel contains similarity to Interpro domains IPR013279 (Apoptosis regulator, Bcl-X), IPR012307 (Xylose isomerase-type TIM barrel), IPR013022 (Xylose isomerase-like, TIM barrel)
31	B0024.3	B0024.3	n/a	chrV 10,288,395	contains similarity to Pfam domain PF01705 CX module contains similarity to Interpro domain IPR002619 (Protein of unknown function CX)
32	R06C1.2	R06C1.2	n/a	chrI 11,920,861	contains similarity to Pfam domain PF00348 Polyprenyl synthetase contains similarity to Interpro domains IPR000092 (Polyprenyl synthetase), IPR008949 (Terpenoid synthase)
33	C35A5.7	C35A5.7	n/a	chrV 10,512,499	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
34	ZC449.4	ZC449.4	n/a	chrX 5,028,845
35	nex-4	C37H5.1	n/a	chrV 4,856,278	nex-4 encodes a predicted annexin.
36	T02E9.3	T02E9.3	n/a	chrV 11,364,314	T02E9.3 encodes a homolog of human melatonin type 1b receptors, and more generally of mammalian dopamine and serotonin (5-HT) receptors; T02E9.3 is partly required for male tail curling, with T02E9.3(RNAi) animals showing reduced curling in exogenous 5-HT; T02E9.3 is required for full sensitivity to 5-HT, normal brood sizes, and pharyngeal pumping; T02E9.3 is expressed in head and tail neurons.
37	sulp-2	F14D12.5	n/a	chrX 5,597,522	sulp-2 encodes one of eight C. elegans members of the sulfate permease family of anion transporters; by homology, SULP-2 is predicted to function as an anion transporter that regulates cellular pH and volume via transmembrane movement of electrolytes and fluids and when expressed in Xenopus oocytes, SULP-2 does exhibit modest uptake of sulfate; a SULP-2::GFP fusion is expressed in the intestine and rectal gland cells, where it localizes to the basolateral membrane and in cephalic and deirid neurons, where it localizes to sensillar endings.
38	C36C9.5	C36C9.5	n/a	chrX 1,701,859
39	B0507.2	B0507.2	n/a	chrV 8,775,382	contains similarity to Interpro domain IPR004328 (BRO1)
40	C37H5.2	C37H5.2	n/a	chrV 4,848,674	contains similarity to Pfam domain PF00561 alpha/beta hydrolase fold contains similarity to Interpro domains IPR000073 (Alpha/beta hydrolase fold-1), IPR000639 (Epoxide hydrolase-like), IPR003089 (Alpha/beta hydrolase), IPR002410 (Peptidase S33, prolyl aminopeptidase)
41	T26F2.2	T26F2.2	n/a	chrV 13,982,237	contains similarity to Homo sapiens Isoform 1 of Protein Dom3Z; ENSEMBL:ENSP00000337759
42	grsp-2	T28C6.1	n/a	chrIV 8,817,412	C. elegans GRSP-2 protein; contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR000817 (Prion protein), IPR008119 (Dense granule Gra6 protein), IPR001151 (GPR6 orphan receptor)
43	C03B1.4	C03B1.4	n/a	chrX 6,365,064
44	C31H2.3	C31H2.3	n/a	chrX 5,152,942
45	bath-26	T07H3.6	n/a	chrII 1,600,097	C. elegans BATH-26 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain) , PF00917 (MATH domain) contains similarity to Interpro domains IPR002083 (MATH), IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
46	T26F2.1	T26F2.1	n/a	chrV 13,975,534	contains similarity to Pfam domain PF00182 Chitinase class I contains similarity to Interpro domain IPR000726 (Glycoside hydrolase, family 19, catalytic)
47	ptr-9	F54G8.5	n/a	chrIII 9,159,358	ptr-9 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins; PTR-9 is required for normal development in mass RNAi assays.
48	sre-53	C50E10.3	n/a	chrII 12,322,214	C. elegans SRE-53 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domains IPR004151 (C. elegans Sre G protein-coupled chemoreceptor), IPR000366 (Fungal pheromone mating factor STE2 GPCR)
49	F46B3.1	F46B3.1	n/a	chrV 20,592,082	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
50	Y51B9A.4	Y51B9A.4	n/a	chrII 9,408,334	contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011022 (Arrestin-like, C-terminal), IPR011021 (Arrestin-like, N-terminal)