UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	sra-20	F28C12.4	0	chrI 12,697,375	C. elegans SRA-20 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
2	Y62H9A.9	Y62H9A.9	n/a	chrX 11,896,785	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8I659
3	F23A7.3	F23A7.3	n/a	chrX 16,221,101	contains similarity to Schizosaccharomyces pombe Endocytosis protein end4 (SLA2 protein homolog).; SW:Q9P6L5
4	fbxa-214	Y38A10A.4	n/a	chrV 6,068,922	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
5	F41D9.1	F41D9.1	n/a	chrX 8,380,568	contains similarity to Pfam domains PF07653 (Variant SH3 domain) , PF00018 (SH3 domain) , PF00566 (TBC domain) , PF02759 (RUN domain) contains similarity to Interpro domains IPR000195 (RabGAP/TBC), IPR001452 (Src homology-3), IPR004012 (RUN), IPR013315 (Spectrin alpha chain), IPR011511 (Variant SH3)
6	sre-41	Y57A10B.5	n/a	chrII 12,388,981	C. elegans SRE-41 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
7	Y41C4A.2	Y41C4A.2	n/a	chrIII 11,653,209	contains similarity to Pfam domain PF01425 Amidase contains similarity to Interpro domain IPR000120 (Amidase signature enzyme)
8	F21A10.4	F21A10.4	n/a	chrX 10,185,057	contains similarity to Mus musculus Tumor rejection antigen P815A.; SW:TUR8_MOUSE
9	R10A10.1	R10A10.1	n/a	chrI 6,418,689
10	str-236	K02H11.3	n/a	chrV 1,527,292	C. elegans STR-236 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR003567 (Cytochrome c-type biogenesis protein)
11	srj-6	F31F4.8	n/a	chrV 653,904	C. elegans SRJ-6 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
12	nhr-197	K06B4.7	n/a	chrV 15,688,881	C. elegans NHR-197 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
13	srw-84	Y43F8A.4	n/a	chrV 19,382,978	C. elegans SRW-84 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
14	C28H8.2	C28H8.2	n/a	chrIII 5,923,760
15	srw-47	K10G4.2	n/a	chrV 17,261,345	C. elegans SRW-47 protein; contains similarity to Pfam domain PF06976 Protein of unknown function (DUF1300) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR010726 (Protein of unknown function DUF1300), IPR000276 (GPCR, rhodopsin-like)
16	C34D1.1	C34D1.1	n/a	chrV 13,224,279	contains similarity to Pfam domain PF00751 (DM DNA binding domain)
17	K10C9.1	K10C9.1	n/a	chrV 1,077,400
18	W06G6.2	W06G6.2	n/a	chrV 16,629,439	contains similarity to Bombyx mori Hunchback protein (Fragment).; SW:HUNB_BOMMO
19	twk-33	W06D12.5	n/a	chrV 17,712,140	C. elegans TWK-33 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
20	srw-43	F14F8.5	n/a	chrV 16,686,204	C. elegans SRW-43 protein; contains similarity to Pfam domain PF06976 Protein of unknown function (DUF1300) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR010726 (Protein of unknown function DUF1300), IPR001991 (Sodium:dicarboxylate symporter), IPR000276 (GPCR, rhodopsin-like)
21	F54D12.8	F54D12.8	n/a	chrII 1,396,527	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domains IPR006583 (CW), IPR003609 (Apple-like)
22	srab-16	R13D11.6	n/a	chrV 783,761	C. elegans SRAB-16 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
23	srx-32	R13D11.9	n/a	chrV 820,140	C. elegans SRX-32 protein ;
24	Y75B8A.34	Y75B8A.34	n/a	chrIII 12,360,286	contains similarity to Homo sapiens Kappa-type opioid receptor; ENSEMBL:ENSP00000265572
25	Y38H6C.17	Y38H6C.17	n/a	chrV 20,537,681	Y38H6C.17 encodes a putative amino acid transporter that inhibits CEP-1- and HUS-1-dependent germline apoptosis, as do BMK-1, RAD-50, and RAD-51; Y38H6C.17 has 11 predicted transmembrane alpha-helices; Y38H6C.17 has multiple C. elegans paralogs and non-nematode orthologs, including budding yeast AVT3 and AVT4 and human SLC36A1 (OMIM:606561).
26	F58E2.2	F58E2.2	n/a	chrIV 3,470,373
27	F35F10.13	F35F10.13	n/a	chrV 3,318,633	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
28	C50H2.6	C50H2.6	n/a	chrV 9,921,737	contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase and ligase)
29	C26E6.1	C26E6.1	n/a	chrIII 4,957,176	contains similarity to Interpro domain IPR011009 (Protein kinase-like)
30	K02F3.7	K02F3.7	n/a	chrIII 836,776
31	C05C12.6	C05C12.6	n/a	chrIV 11,232,367	contains similarity to Interpro domain IPR000345 (Cytochrome c heme-binding site)
32	F59B10.6	F59B10.6	n/a	chrII 10,523,795	contains similarity to Prochlorococcus marinus Possible paralytic/GBP/PSP peptide precursor.; TR:Q7TUU1
33	B0310.3	B0310.3	n/a	chrX 512,692
34	str-67	K10C9.6	n/a	chrV 1,063,591	C. elegans STR-67 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
35	clec-114	C49A1.9	n/a	chrI 14,233,796	C. elegans CLEC-114 protein; contains similarity to Interpro domains IPR006583 (CW), IPR016187 (C-type lectin fold)
36	nhr-156	C17E7.1	n/a	chrV 3,906,529	C. elegans NHR-156 protein; contains similarity to Pfam domain PF00105 Zinc finger, C4 type (two domains) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type)
37	str-151	T03E6.1	n/a	chrV 16,577,135	C. elegans STR-151 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
38	twk-14	K01D12.4	n/a	chrV 12,388,845	C. elegans TWK-14 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR005410 (Potassium channel, two pore-domain, THIK), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
39	C31B8.9	C31B8.9	n/a	chrV 2,912,083	contains similarity to Pfam domain PF04590 Protein of unknown function, DUF595 contains similarity to Interpro domain IPR007669 (Protein of unknown function DUF595)
40	F38B6.7	F38B6.7	n/a	chrX 6,697,033	contains similarity to Interpro domain IPR006150 (Cysteine-rich repeat)
41	F15E6.9	F15E6.9	n/a	chrIV 4,296,304
42	T25E4.2	T25E4.2	n/a	chrII 5,581,240
43	col-9	F54B11.1	n/a	chrX 13,590,542	col-9 encodes a collagen protein.
44	ncx-5	Y32F6B.2	n/a	chrV 10,488,232	ncx-5 encodes a putative 4Na[+]/1Ca[2+],1K[+] exchanger, orthologous to human SLC24A1-5 and paralogous to NCX-4; NCX-5 is predicted to export free cytoplasmic Ca[2+] with low affinity but high capacity, being complemented by low-capacity/high-affinity Ca[2+] ATPase pumps such as MCA-1/-3; NCX-5 has tandem Calx-alpha domains predicted to carry out ion transport; NCX-5 has no obvious function in mass RNAi assays.
45	twk-40	T28A8.1	n/a	chrIII 13,487,791	C. elegans TWK-40 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
46	sri-37	D2062.2	n/a	chrII 2,630,401	C. elegans SRI-37 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
47	srw-86	C25F9.7	n/a	chrV 19,400,392	C. elegans SRW-86 protein ;
48	B0546.5	B0546.5	n/a	chrIV 3,389,078	contains similarity to Pfam domain PF06681 Protein of unknown function (DUF1182) contains similarity to Interpro domain IPR010601 (Protein of unknown function DUF1182)
49	T05C1.1	T05C1.1	n/a	chrII 4,479,688
50	srh-214	T20B3.4	n/a	chrV 16,828,966	C. elegans SRH-214 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)