UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F38H4.5	F38H4.5	3e-170	chrIV 11,852,639	contains similarity to Pfam domain PF02274 Amidinotransferase contains similarity to Interpro domain IPR003198 (Amidinotransferase)
2	ZK354.6	ZK354.6	n/a	chrIV 5,296,718	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
3	bath-47	T07H3.1	n/a	chrII 1,603,204	C. elegans BATH-47 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain) (2), PF00917 (MATH domain) (2)contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH), IPR000694 (Proline-rich region), IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
4	del-4	T28B8.5	n/a	chrI 8,140,996	C. elegans DEL-4 protein; contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)
5	C56C10.12	C56C10.12	n/a	chrII 6,606,347	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
6	T16A1.3	T16A1.3	n/a	chrII 2,084,511
7	Y116A8C.19	Y116A8C.19	n/a	chrIV 17,039,245	Y116A8C.19 encodes a CCCH tandem zinc finger (TZF) protein; based upon its sequence similarity to C. elegans POS-1, the product of Y116A8C.19 is predicted to function as an RNA-binding protein.
8	B0432.7	B0432.7	n/a	chrII 271,677	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
9	pbo-6	F11C7.1	n/a	chrX 17,431,052	pbo-6/lgc-3 encodes a proton-gated ion channel which has no known function, but that is thought to form functional heterodimers with PBO-5/LGC-2; PBO-6 has no obvious non-nematode orthologs, but is paralogous to PBO-5; while heterologous PBO-6 has no activity when expressed in Xenopus oocytes, it produces strong currents when coexpressed with PBO-5 and stimulated by pH 6.0; PBO-6 is expressed in the most posterior bodywall muscles; unlike pbo-5 mutants, pbo-6(ok1564) mutants and pbo-6(RNAi) animals have no obvious phenotypes.
10	F49C12.1	F49C12.1	n/a	chrIV 9,295,603	contains similarity to Pfam domain PF03407 Protein of unknown function (DUF271) contains similarity to Interpro domain IPR005069 (Protein of unknown function DUF271)
11	Y48A6B.1	Y48A6B.1	n/a	chrIII 10,993,565	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
12	R01H2.4	R01H2.4	n/a	chrIII 7,062,521	contains similarity to Interpro domain IPR000215 (Protease inhibitor I4, serpin)
13	Y53C10A.5	Y53C10A.5	n/a	chrI 12,000,702	contains similarity to Interpro domain IPR000608 (Ubiquitin-conjugating enzyme, E2)
14	F19B10.4	F19B10.4	n/a	chrII 3,661,345	contains similarity to Interpro domain IPR015425 (Actin-binding FH2)
15	pqn-84	Y41C4A.5	n/a	chrIII 11,701,451	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
16	scl-23	B0545.3	n/a	chrIV 88,065	C. elegans SCL-23 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related), IPR014044 (SCP-like extracellular)
17	F21C3.6	F21C3.6	n/a	chrI 7,284,859	contains similarity to Homo sapiens Isoform 1 of Caldesmon; ENSEMBL:ENSP00000354826
18	C06A5.10	C06A5.10	n/a	chrI 5,982,746
19	F56H1.3	F56H1.3	n/a	chrI 5,732,820	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00533 (BRCA1 C Terminus (BRCT) domain) contains similarity to Interpro domains IPR015988 (STAT transcription factor, coiled coil), IPR002110 (Ankyrin), IPR003125 (Protein of unknown function WSN), IPR001357 (BRCT)
20	C44E4.2	C44E4.2	n/a	chrI 4,632,370	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
21	R02F11.2	R02F11.2	n/a	chrV 4,795,145
22	Y116A8C.23	Y116A8C.23	n/a	chrIV 17,054,490	contains similarity to Interpro domain IPR000694 (Proline-rich region)
23	C01G6.7	C01G6.7	n/a	chrII 9,292,949	contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase and ligase)
24	E01G6.2	E01G6.2	n/a	chrX 12,257,730	contains similarity to Streptomyces coelicolor;Streptomyces lividans Putative secreted protein (Putative TWIN ARGININ translocationsreceptor).; TR:Q9RJ68
25	F58G1.8	F58G1.8	n/a	chrII 12,925,362	contains similarity to Interpro domain IPR009022 (Elongation factor G, III and V)
26	irk-1	R03E9.4	n/a	chrX 6,769,400	C. elegans IRK-1 protein; contains similarity to Pfam domain PF01007 Inward rectifier potassium channel contains similarity to Interpro domains IPR013521 (Potassium channel, inwardly rectifying, Kir, conserved region 2), IPR014756 (Immunoglobulin E-set), IPR013518 (Potassium channel, inwardly rectifying, Kir, cytoplasmic), IPR001838 (Potassium channel, inwardly rectifying, Kir-like)
27	E03H4.12	E03H4.12	n/a	chrI 12,436,494	contains similarity to Pfam domain PF03360 Glycosyltransferase family 43 contains similarity to Interpro domain IPR005027 (Glycosyl transferase, family 43)
28	F18A12.4	F18A12.4	n/a	chrII 3,405,348	F18A12.4 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; F18A12.4 has no clear orthologs in other organisms.
29	F49B2.6	F49B2.6	n/a	chrI 14,335,445	contains similarity to Pfam domain PF01433 Peptidase family M1 contains similarity to Interpro domains IPR014782 (Peptidase M1, membrane alanine aminopeptidase, N-terminal), IPR006025 (Peptidase M, neutral zinc metallopeptidases, zinc-binding site), IPR001930 (Peptidase M1, membrane alanine aminopeptidase)
30	CD4.1	CD4.1	n/a	chrV 5,608,204
31	R10F2.4	R10F2.4	n/a	chrIII 2,921,110	contains similarity to Interpro domain IPR001778 (Pollen allergen Poa pIX/Phl pVI, C-terminal)
32	nhr-153	C13C4.1	n/a	chrV 12,105,417	C. elegans NHR-153 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core), IPR001781 (Zinc finger, LIM-type)
33	F56D5.2	F56D5.2	n/a	chrIV 9,397,813	contains similarity to Bacillus subtilis Hypothetical protein yxcE.; SW:YXCE_BACSU
34	ceh-12	F33D11.4	n/a	chrI 5,841,090	ceh-12 encodes a homeobox protein orthologous to human HLXB9 (OMIM:142994, mutated in Currarino syndrome) that is required for normal synaptic inputs to motor neurons VA2-VA10 (sisters to VB3-VB11); ceh-12 is expressed in VB motor neurons, but repressed in their VA siblings by UNC-4 and UNC-37; unc-4 or unc-37 mutants show ectopic CEH-12 expression in VA neurons, which is both necessary and sufficient to induce VA neurons to form gap junctions with normally VB-specific interneurons; ceh-12 mutations have no grossly obvious phenotype, and have no effect on del-1 or acr-5 repression in VB neurons, but do suppress the backward movement defect of unc-4 mutants, and do derepress vab-7 (normally restricted to DB and VC motor neurons); CEH-12, like other HLXB9 orthologs, has an N-terminal eh1 domain that may interact with UNC-37/Groucho, and that may indicate CEH-12 to be a transcriptional repressor.
35	fbxb-65	C43D7.2	n/a	chrV 19,330,120	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
36	srw-7	R08F11.5	n/a	chrV 3,806,992	C. elegans SRW-7 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
37	W04C9.5	W04C9.5	n/a	chrI 464,897	contains similarity to Pfam domain PF00071 Ras family contains similarity to Interpro domains IPR003577 (Ras small GTPase, Ras type), IPR001806 (Ras GTPase), IPR003579 (Ras small GTPase, Rab type), IPR013753 (Ras)
38	F40G12.9	F40G12.9	n/a	chrV 14,282,717	contains similarity to Pfam domain PF04942 (CC domain)
39	set-8	F02D10.7	n/a	chrX 13,447,398	set-8 encodes a protein with an N-terminal RING-type zinc finger, and a C-terminal SET domain; SET-8 has no non-nematode orthologs, but is paralogous to MES-4; SET-8 is required for a normally low spontaneous somatic mutation rate; otherwise, neither set-8(tm2113) nor set-8(RNAi) have any obvious phenotypes.
40	T09B9.3	T09B9.3	n/a	chrX 9,760,250	contains similarity to Pfam domain PF03009 Glycerophosphoryl diester phosphodiesterase family contains similarity to Interpro domain IPR004129 (Glycerophosphoryl diester phosphodiesterase)
41	T11F1.3	T11F1.3	n/a	chrII 2,955,703
42	T27E7.4	T27E7.4	n/a	chrIV 14,534,258	contains similarity to Pelomedusa subrufa NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3).; SW:NU5M_PELSU
43	srr-2	T26H2.8	n/a	chrV 19,215,331	C. elegans SRR-2 protein; contains similarity to Pfam domain PF03268 Caenorhabditis protein of unknown function, DUF267 contains similarity to Interpro domains IPR004950 (Protein of unknown function DUF267, Caenorhabditis species), IPR002455 (GPCR, family 3, gamma-aminobutyric acid receptor, type B)
44	C14A11.5	C14A11.5	n/a	chrX 2,806,295
45	wht-3	C16C10.12	n/a	chrIII 4,149,469	C16C10.12 encodes an ATP-binding cassette (ABC) transporter; C16C10.12 activity is required for efficient RNA interference (RNAi) of a germline-expressed target, pop-1.
46	W02B8.2	W02B8.2	n/a	chrII 13,911,962	contains similarity to Pfam domains PF00169 (PH domain) , PF00780 (CNH domain) , PF00130 (Phorbol esters/diacylglycerol binding domain (C1 domain)) contains similarity to Interpro domains IPR001849 (Pleckstrin-like), IPR011993 (Pleckstrin homology-type), IPR000533 (Tropomyosin), IPR001180 (Citron-like), IPR002219 (Protein kinase C, phorbol ester/diacylglycerol binding)
47	nhr-180	F31F4.12	n/a	chrV 666,725	C. elegans NHR-180 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
48	T28D6.7	T28D6.7	n/a	chrIII 11,345,403	contains similarity to Pfam domain PF01852 START domain contains similarity to Interpro domain IPR002913 (Lipid-binding START)
49	C34F11.1	C34F11.1	n/a	chrII 5,213,423	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR011016 (Zinc finger, variant RING-type)
50	srsx-24	C03G6.16	n/a	chrV 7,378,672	C. elegans SRSX-24 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)