UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	gst-3	K08F4.11	6e-114	chrIV 10,139,782	gst-3 encodes a predicted glutathione S-transferase.
2	bra-2	F23H11.1	n/a	chrIII 911,744	The bra-2 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1), paralogous to bra-1, that may act upon the SMA-6 TGF-beta signalling pathway
3	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
4	C13A2.4	C13A2.4	n/a	chrV 7,279,942	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
5	fip-1	F22B7.4	n/a	chrIII 8,639,817	C. elegans FIP-1 protein ; contains similarity to Homo sapiens Isoform A2 of Heterogeneous nuclear ribonucleoproteins A2/B1; ENSEMBL:ENSP00000354021
6	F08G12.8	F08G12.8	n/a	chrX 11,317,416	contains similarity to Mus musculus Tenascin-R.; TR:Q8BYI9
7	clec-98	ZK39.7	n/a	chrI 11,154,783	C. elegans CLEC-98 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
8	nlp-35	C33A12.2	n/a	chrIV 9,518,633	C. elegans NLP-35 protein ;
9	ZK971.1	ZK971.1	n/a	chrII 10,279,516	contains similarity to Arabidopsis thaliana Gb\|AAB67622.1.; TR:Q9LT65
10	F32G8.3	F32G8.3	n/a	chrV 10,554,899	contains similarity to Homo sapiens Splice isoform Long of Q13595 Transformer-2 protein homolog; ENSEMBL:ENSP00000297071
11	F07C4.6	F07C4.6	n/a	chrV 7,627,266	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
12	nhr-79	T26H2.9	n/a	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
13	C06G3.3	C06G3.3	n/a	chrIV 7,036,272
14	T19D12.3	T19D12.3	n/a	chrII 6,660,581
15	cex-1	F56D1.6	n/a	chrII 5,448,034	C. elegans CEX-1 protein; contains similarity to Pfam domain PF00036 EF hand contains similarity to Interpro domains IPR011992 (EF-Hand type), IPR002048 (Calcium-binding EF-hand)
16	tsp-5	Y45F10B.1	n/a	chrIV 13,591,144	C. elegans TSP-5 protein; contains similarity to Pfam domain PF00335 Tetraspanin family contains similarity to Interpro domains IPR000301 (CD9/CD37/CD63 antigen), IPR008952 (Tetraspanin)
17	dhs-26	ZK816.5	n/a	chrX 3,361,621	dhs-26 encodes a short-chain dehydrogenase predicted to be mitochondrial.
18	grl-17	C56A3.1	n/a	chrV 13,562,991	grl-17 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain; GRL-17 is expressed in pharynx, rectal epithelium, amphid socket cells, larval arcade cells, and larval hypodermis; the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins.
19	C13A2.3	C13A2.3	n/a	chrV 7,283,523	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)
20	nlp-12	M01D7.5	n/a	chrI 1,843,618	nlp-12 encodes two predicted neuropeptide-like proteins; nlp-12 is part of a LQFamide neuropeptide family that has members in at least one other nematode species; nlp-12 is expressed in one tail neuron; as loss of nlp-12 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-12-encoded peptides in development and/or behavior is not yet known.
21	nlp-7	F18E9.2	n/a	chrX 8,593,444	C. elegans NLP-7 protein ;
22	amt-1	C05E11.4	n/a	chrX 4,572,644	amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane; as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known.
23	B0507.8	B0507.8	n/a	chrV 8,761,695	contains similarity to Schizosaccharomyces pombe Nucleoporin nup211 (Nuclear pore protein nup211).; SW:O74424
24	C03G6.17	C03G6.17	n/a	chrV 7,380,393	contains similarity to Interpro domain IPR016181 (Acyl-CoA N-acyltransferase)
25	C45B2.3	C45B2.3	n/a	chrX 6,083,106
26	F14F11.2	F14F11.2	n/a	chrII 8,295,048	contains similarity to Rhodopirellula baltica Methanol dehydrogenase regulatory protein (EC 1.1.1.244).; TR:Q7UX83
27	gst-41	R13D7.7	0.000000000000001	chrV 7,398,864	C. elegans GST-41 protein; contains similarity to Pfam domains PF00043 (Glutathione S-transferase, C-terminal domain) , PF02798 (Glutathione S-transferase, N-terminal domain) contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR004046 (Glutathione S-transferase, C-terminal), IPR004045 (Glutathione S-transferase, N-terminal), IPR010987 (Glutathione S-transferase, C-terminal-like)
28	Y73F4A.3	Y73F4A.3	n/a	chrIV 9,040,014	contains similarity to Pfam domain PF03351 DOMON domain contains similarity to Interpro domains IPR005018 (DOMON related), IPR008960 (Carbohydrate-binding family 9/cellobiose dehydrogenase, cytochrome), IPR013050 (DOMON)
29	skr-5	F47H4.10	n/a	chrV 17,348,283	The skr-5 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-5(RNAi) animals are at least superficially normal.
30	F46A8.7	F46A8.7	n/a	chrI 11,238,164	contains similarity to Homo sapiens hypothetical protein MGC35285; ENSEMBL:ENSP00000279688
31	ttr-1	K03H1.6	n/a	chrIII 9,929,635	ttr-1 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; although TTR-1 belongs to a family of apparently nematode-specific proteins whose function is not yet known, loss of ttr-1 function via RNAi can result in enhanced dauer formation and daf-16-dependent lifespan extension.
32	C32F10.4	C32F10.4	n/a	chrI 5,809,249
33	fbxa-164	C08E3.7	n/a	chrII 1,613,450	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
34	scl-2	F49E11.10	n/a	chrIV 13,058,350	C. elegans SCL-2 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related)
35	F48G7.2	F48G7.2	n/a	chrV 637,034
36	B0284.1	B0284.1	n/a	chrIII 4,377,822	contains similarity to Interpro domain IPR016027 (Nucleic acid-binding, OB-fold-like)
37	col-116	F17E9.1	n/a	chrIV 8,357,297	C. elegans COL-116 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
38	C30F12.3	C30F12.3	n/a	chrI 6,971,092
39	C34F11.8	C34F11.8	n/a	chrII 5,210,353	contains similarity to Interpro domain IPR002952 (Eggshell protein)
40	tag-38	B0222.4	n/a	chrV 9,145,742	C. elegans TAG-38 protein; contains similarity to Pfam domains PF00282 (Pyridoxal-dependent decarboxylase conserved domain) , PF00266 (Aminotransferase class-V) contains similarity to Interpro domains IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase, major region), IPR006025 (Peptidase M, neutral zinc metallopeptidases, zinc-binding site), IPR000192 (Aminotransferase, class V/Cysteine desulphurase), IPR015421 (Pyridoxal phosphate-dependent transferase, major region, subdomain 1)
41	W08A12.4	W08A12.4	n/a	chrV 3,675,610	contains similarity to Paramecium tetraurelia Chromosome undetermined scaffold_94, whole genome shotgun sequence.; TR:A0EFX6
42	C25G4.2	C25G4.2	n/a	chrIV 12,443,605	contains similarity to Pfam domain PF03959 Serine hydrolase (FSH1) contains similarity to Interpro domain IPR005645 (Protein of unknown function DUF341)
43	zig-3	C14F5.2	n/a	chrX 7,931,218	zig-3 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; a zig-3::gfp reporter fusion is expressed in the PVT, AIM, and ASI neurons, as well as in the vulva and weakly in the body wall muscle.
44	F07C3.9	F07C3.9	n/a	chrV 9,254,456
45	F40G12.5	F40G12.5	n/a	chrV 14,269,931	contains similarity to Pfam domain PF03236 Domain of unknown function DUF263 contains similarity to Interpro domain IPR004920 (Protein of unknown function DUF263)
46	lact-6	C06A12.5	n/a	chrIV 17,430,817	lact-6 encodes a beta-lactamase domain-containing protein that contains a predicted signal sequence in its N terminus.
47	ZK970.7	ZK970.7	n/a	chrII 10,312,538	contains similarity to Pfam domain PF02520 Domain of unknown function DUF148 contains similarity to Interpro domain IPR003677 (Protein of unknown function DUF148)
48	hsp-12.3	F38E11.1	n/a	chrIV 9,445,065	hsp-12.3 encodes a small heat-shock protein that forms heterotetramers with HSP-12.2 and has no chaperone-like activity; structurally, HSP-12.3 is mostly a beta-sheet; at least one HSP-12 (which may or may not be HSP-12.2) is ubiquitously expressed in L1 larvae, and later expressed in adult spermatids (and perhaps spermatocytes), and some adult vulval cells; hsp-12.3 is upregulated in daf-2 mutants, suggesting that hsp-12.3's expression may contribute to prolonged lifespan in dauer larvae.
49	ttr-5	C40H1.5	n/a	chrIII 9,330,525	C40H1.5 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; the product of C40H1.5 belongs to a family of apparently nematode-specific proteins whose function is not yet known.
50	fbxa-24	F54D10.2	n/a	chrII 3,817,370	C. elegans FBXA-24 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)