UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	gly-17	T15D6.3	0	chrI 12,377,779	gly-17 encodes a protein similar to 2/I N-acetylglucosaminyltransferase.
2	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
3	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
4	gnrr-2	C15H11.2	n/a	chrV 14,410,464	C. elegans GNRR-2 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like), IPR001817 (Vasopressin receptor)
5	C15A7.2	C15A7.2	n/a	chrX 12,072,281	contains similarity to Xenopus laevis Transmembrane protein 145.; SW:Q5U239
6	his-64	F22B3.1	n/a	chrIV 11,407,277	his-64 encodes an H4 histone.
7	T28F2.1	T28F2.1	n/a	chrI 3,640,560	contains similarity to Pfam domain PF01531 Glycosyl transferase family 11 contains similarity to Interpro domain IPR002516 (Glycosyl transferase, family 11)
8	K09D9.12	K09D9.12	n/a	chrV 4,003,740
9	srw-16	T10H4.5	n/a	chrV 15,274,096	C. elegans SRW-16 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR008365 (Prostanoid receptor)
10	ugt-32	F47C10.6	n/a	chrV 3,842,918	C. elegans UGT-32 protein; contains similarity to Pfam domain PF00201 UDP-glucoronosyl and UDP-glucosyl transferase contains similarity to Interpro domain IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)
11	C18E3.5	C18E3.5	n/a	chrI 4,198,275	contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR001632 (G-protein, beta subunit), IPR015943 (WD40/YVTN repeat-like)
12	ZC196.9	ZC196.9	n/a	chrV 8,724,688	contains similarity to Pfam domain PF04789 Protein of unknown function (DUF621) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR006874 (Protein of unknown function DUF621)
13	srh-252	T19C9.3	n/a	chrV 17,222,863	C. elegans SRH-252 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR000215 (Protease inhibitor I4, serpin)
14	T05A8.7	T05A8.7	n/a	chrII 2,741,328
15	sdc-2	C35C5.1	n/a	chrX 11,528,006	The sdc-2 gene encodes a protein that represses transcription of X chromosomes to achieve dosage compensation, and that also represses the male sex-determination gene her-1 to elicit hermaphrodite differentiation.
16	E01G6.3	E01G6.3	n/a	chrX 12,243,099	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domains IPR002018 (Carboxylesterase, type B), IPR016196 (MFS general substrate transporter)
17	set-24	Y43F11A.5	n/a	chrII 12,122,894	set-24 encodes a protein with an N-terminal SET domain, followed by two SPK domains; SET-24's domain organization resembles that of SET-5, but SET-24 has no known non-nematode orthologs or C. elegans paralogs; neither set-24(n4909) nor set-24(RNAi) have any obvious phenotypes.
18	C25A1.12	C25A1.12	n/a	chrI 10,192,090	contains similarity to Pfam domain PF00561 alpha/beta hydrolase fold contains similarity to Interpro domains IPR000073 (Alpha/beta hydrolase fold-1), IPR003089 (Alpha/beta hydrolase), IPR002410 (Peptidase S33, prolyl aminopeptidase)
19	srt-34	F54E2.6	n/a	chrV 2,817,549	C. elegans SRT-34 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
20	R05C11.2	R05C11.2	n/a	chrIV 2,058,493	contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
21	sre-37	F15A4.3	n/a	chrII 12,466,610	C. elegans SRE-37 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
22	K05C4.3	K05C4.3	n/a	chrI 14,750,791	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
23	ZC411.1	ZC411.1	n/a	chrV 8,878,230
24	nhr-231	Y17D7B.1	n/a	chrV 18,792,886	C. elegans NHR-231 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
25	F46F5.8	F46F5.8	n/a	chrII 821,517
26	nhr-102	T06C12.6	n/a	chrV 15,875,252	nhr-102 encodes a nuclear receptor that is most highly conserved amongst nematode species.
27	aat-4	T13A10.10	n/a	chrIV 6,274,136	aat-4 encodes a predicted amino acid transporter catalytic subunit; unlike catalytic subunits in other organisms, however, AAT-4 does not contain the highly conserved cysteine residue known to facilitate covalent interaction with a glycoprotein subunit, suggesting that AAT-4 does not require this residue for heterodimer formation or, alternatively, does not require the glycoprotein subunit for function.
28	fbxa-7	T20H9.1	n/a	chrIII 2,250,698	C. elegans FBXA-7 protein; contains similarity to Pfam domains PF01827 (FTH domain) , PF00646 (F-box domain) contains similarity to Interpro domains IPR002900 (Protein of unknown function DUF38, Caenorhabditis species), IPR001810 (Cyclin-like F-box)
29	F44F1.2	F44F1.2	n/a	chrI 13,253,455
30	K11G9.3	K11G9.3	n/a	chrV 6,670,893	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domain IPR002018 (Carboxylesterase, type B)
31	twk-36	R12G8.2	n/a	chrV 17,745,322	C. elegans TWK-36 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
32	F54E7.6	F54E7.6	n/a	chrIII 5,660,439
33	acc-3	F55D10.5	n/a	chrX 4,725,216	C. elegans ACC-3 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR001390 (Gamma-aminobutyric-acid A receptor, alpha subunit), IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
34	bath-33	C08E3.3	n/a	chrII 1,605,408	C. elegans BATH-33 protein; contains similarity to Pfam domains PF00917 (MATH domain) , PF00651 (BTB/POZ domain) contains similarity to Interpro domains IPR002083 (MATH), IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
35	F48G7.13	F48G7.13	n/a	chrV 615,813
36	C24H12.2	C24H12.2	n/a	chrII 437,796
37	K09E3.6	K09E3.6	n/a	chrX 17,114,487	contains similarity to Pfam domain PF03353 DUF278 contains similarity to Interpro domain IPR005020 (Protein of unknown function DUF278)
38	C10B5.1	C10B5.1	n/a	chrV 8,582,501	contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR016160 (Aldehyde dehydrogenase, conserved site), IPR015943 (WD40/YVTN repeat-like)
39	srh-104	F21H7.7	n/a	chrV 16,243,471	C. elegans SRH-104 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
40	H34P18.1	H34P18.1	n/a	chrV 6,805,459	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
41	T01H10.8	T01H10.8	n/a	chrX 12,134,602	T01H10.8 encodes a BEACH domain-containing protein that is orthologous to the mammalian lysosomal trafficking regulator LYST which when mutated leads to Chediak-Higashi syndrome (CHS, OMIM:606897).
42	M04D8.4	M04D8.4	n/a	chrIII 10,030,454	contains similarity to Clostridium perfringens Hypothetical protein CPE0262.; TR:Q8XNS0
43	C47E8.6	C47E8.6	n/a	chrV 14,690,485	contains similarity to Pfam domains PF07735 (F-box associated) , PF00646 (F-box domain) contains similarity to Interpro domains IPR001810 (Cyclin-like F-box), IPR012885 (F-box associated type 2)
44	srt-6	R13D7.10	n/a	chrV 7,408,161	C. elegans SRT-6 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR002651 (Protein of unknown function DUF32), IPR008075 (Lipocalin-1 receptor)
45	srh-68	T21B4.5	n/a	chrII 12,507,810	C. elegans SRH-68 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR002379 (ATPase, F0/V0 complex, subunit C)
46	T08G3.6	T08G3.6	n/a	chrV 16,446,543	contains similarity to Interpro domain IPR008975 ()
47	C23H4.2	C23H4.2	n/a	chrX 12,221,143	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domains IPR008262 (Lipase, active site), IPR002018 (Carboxylesterase, type B)
48	C18D4.3	C18D4.3	n/a	chrV 17,532,536	contains similarity to Acetobacter diazotrophicus FixX.; TR:Q9FA07
49	C14A11.2	C14A11.2	n/a	chrX 2,803,965
50	srt-62	T27C10.2	n/a	chrI 10,900,411	C. elegans SRT-62 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)