Affine Alignment
 
Alignment between PCDHB7 (top ENST00000231137.6 793aa) and PCDHB13 (bottom ENST00000341948.6 798aa) score 55252

001 MEARVERAVQKRQVLFLCVFLGMSWAG-AEPLRYFVAEETERGTFLTNLAKDLGLGVGEL 059
    |||  +   ++|||||  + ||+| || |||  | | ||||  +|+|||||||||   | 
001 MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREF 060

060 RARGTRIVSDQNMQILLLSSLTGDLLLNEKLDREELCGPREPCVLPFQLLLEKPFQIFRA 119
      || |+||  |   | |+  | |||||||||||+|||  ||||| ||+||| ||+ |+|
061 SRRGVRVVSRGNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQA 120

120 ELWVRDINDHAPVFLDREISLKILESTTPGAAFLLESAQDSDVGTNSLSNYTISPNAYFH 179
    || | |||||+|||||+++ +|+ ||+ ||  | |++|+| ||| |++ || ||||+|| 
121 ELQVIDINDHSPVFLDKQMLVKVSESSPPGTTFPLKNAEDLDVGQNNIENYIISPNSYFR 180

180 INVHDSGEGNIYPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNA 239
    +      +|  ||||||++ |||||  |  ||||||||||||||||| | | ||||||||
181 VLTRKRSDGRKYPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNA 240

240 PDFVRSLYKVQVPENSPVGSMVVSVSARDLDTGSNGEIAYAFSYATERILKTFQINPTSG 299
    |+| +  |+||+ |+|||| +|| ||| |+||| ||||+|+   |+| | |||+||| +|
241 PEFEQPFYRVQISEDSPVGFLVVKVSATDVDTGVNGEISYSLFQASEEIGKTFKINPLTG 300

300 SLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLTSPIAEN 359
     + || |||+| +|+| + |+|+| |  ||||||++ | |+||+ ||+ +|+ |||| ||
301 EIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPEN 360

360 SPETVVAVFRIRDRDSGNNGKTVCSIQDDVPFILKPSVENFYTLVTEKPLDRERNTEYNI 419
    +||||||+| + | ||| |||  ||||+|+||+|| | ||||||+||+|||||   ||||
361 APETVVALFSVSDLDSGENGKISCSIQEDLPFLLK-SAENFYTLLTERPLDRESRAEYNI 419

420 TITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALPIGSVSATDRD 479
    |||||||||| | |+ |+|||++|||||||||||||||||||||||||| | ||||||||
420 TITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRENNSPALHIRSVSATDRD 479

480 SGTNAQVIYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSP 539
    ||||||| ||||| ||||||| |||||||||||||||||||||||| |+|||||+| |||
480 SGTNAQVTYSLLPPQDPHLPLTSLVSINADNGHLFALRSLDYEALQGFQFRVGASDHGSP 539

540 ALSSEALVRVLVLDANDNSPFVLYPLQNSSAPCTEPLPRAAEPGYLVTKVVAVDGDSGQN 599
    ||||||||||+||||||||||||||||| |||||| +|||||||||||||||||||||||
540 ALSSEALVRVVVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQN 599

600 AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLH 659
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
600 AWLSYQLLKATELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH 659

660 VLLVDGFSQPYLRLPEAAPDQANS--LTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRA 717
    |||||||||||| |||||| || +  ||||||||||||||||| ||||||||||||||||
660 VLLVDGFSQPYLPLPEAAPTQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA 719

718 APVGRCSVPEGPFPRHLVDLSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNLLPQST 777
    | |||| ||||| | ||||+||| |||||||||||| |||||||||||||||||  ||  
720 ASVGRCLVPEGPLPGHLVDMSGTRTLSQSYQYEVCLAGGSGTNEFKFLKPIIPNFPPQCP 779

778 GREVEENRPFQNNLGF 793
    |+|++ |  | || ||
780 GKEIQGNSTFPNNFGF 795