Affine Alignment
 
Alignment between CDH20 (top ENST00000262717.9 801aa) and PCDH9 (bottom ENST00000377865.7 1237aa) score 8702

085 SDMDRGDGSIKY--ILSGE---GAGIVFTID-DTTGDIHAIQRLDREERAQYTLRAQALD 138
    +| | |   +++  +|+|+   |  || | + +    +   | ||||++  | ++ +  |
167 TDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVED 226

139 RRTGRPMEPESEFI-IKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDADDPTY 197
       | | +  +  + + + |+||| | | +|     +|| +||||||||+ |||||    
227 --GGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD---I 281

198 GNSARVVYSI-LQGQP----YFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLG 252
    |++| + |    |  |     |++++ ||+| |   ++|||    ++| + | |  |   
282 GSNAEIRYIFGAQVAPATKRLFALNNTTGLI-TVQRSLDREETAIHKVTVLASD--GSST 338

253 GLAGTTTVNITLSDVNDNPPRFPQKHY------QMSVLESAPISSTVGRVFAKDLDEGIN 306
        | |+|+|  |||||||    ++        + + |  |+++ +  +   | |  +|
339 PARATVTINVT--DVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVN 396

307 AEMKYTIVDGDGADAFDISTDPNFQVGIITVKKPLSFESKKSYTLKV---EGANPHLEMR 363
     ++    ++ +         |  +   ++     | +|  | ++ |+   +   | |   
397 GKV-ICFIEREVPFHLKAVYDNQY---LLETSSLLDYEGTKEFSFKIVASDSGKPSL--- 449

364 FLNLGPFQDTTTVHISVEDV-DEPPVFEPGFYFVEVPEDVAIGTTIQIISAKDPDVTNNS 422
             |  | + +||  | ||+|      + | |+   |  +  ||| | |   |+
450 -------NQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNA 502

423 -IRYSIDRSSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVPVT 481
     | | +  ++    || +|  || |  +|  ||||      || | +   |       | 
503 DIVYQLGPNAS---FFDLDRKTGVLTASRVFDREEQERFIFTVTARDNGTPPLQSQAAVI 559

482 IKVLDVNDNAPEFP-RFYEAFVCENAKAGQLIQTVSAVDQDDPRNGQHFYYSLAPEAANN 540
    + ||| |||+|+|    ++ || ||      +  ++  | |    |++   +|+    +|
560 VTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD---AGENKAVTLS-ILNDN 615

541 PNFTIRDNQDNTARILTRRSGFRQQEQSVFHLPILIADSGQPVLSSTGTLTIQVCSCDDD 600
     || +    |  + ++     | +++|| +   +   | |||  |||  +|| |   +|+
616 DNFVL----DPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDN 671

601 GHVMSCSP---EAYMLPVSLSRGALIA 624
      |+   |      ++|+|   |+++|
672 SPVVISPPSNTSFKLVPLSAIPGSVVA 698