Affine Alignment
 
Alignment between PCDH10 (top ENST00000264360.7 1040aa) and PCDH9 (bottom ENST00000377865.7 1237aa) score 17955

002 IVLLLFALLWMVEGVFSQLHYTVQEEQEHGTFVGNIAEDLGLD----ITKLSAR-GFQTV 056
    ++  | | | +   +  +| ||++||      +||| +|| +      |  ||   ++ |
008 LLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVYRLV 067

057 PNS-RTPYLDLNLETGVLY-VNEKIDREQIC-----KQSPSCVLHLEVFL--ENPLELFQ 107
      +   | + ++  || ++  + +||||++|      +   |   ||| +   +   | +
068 SKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIK 127

108 VEIEVLDINDNPPSFPEPDLTVEISESATPGTRFPLESAFDPDVGTNSLRDYE-ITPNSY 166
    ++| | | ||| | || | + + | |+    +|||+ || ||| | | ++ || +   | 
128 IKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSV 187

167 FSLDVQTQGDGNRFAELVLEKPLDREQQAVHRYVLTAVDGGGGGGVGEGGGGGGGAGLPP 226
    | ||+    +| ++ +|++++ |||||+  +   +   |||                   
188 FGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGG------------------- 228

227 QQQRTGTALLTIRVLDSNDNVPAFDQPVYTVSLPENSPPGTLVIQLNATDPDEGQNGEVV 286
      |++ ||+| + | | ||| | | +    | +|||+| || ||||+||| | | | |+ 
229 TPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIR 288

287 YSFSSHISPRARELFGLSPRTGRLEVSGELDYEESPVYQVYVQAKDLGPNAVPAHCKVLV 346
    | | + ++|  + || |+  || + |   || ||+ +++| | | |   ++ ||   | +
289 YIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASD--GSSTPARATVTI 346

347 RVLDANDNAPEISFSTVKEAV------SEGAAPGTVVALFSVTDRDSEENGQVQCELLGD 400
     | | ||| | |    +   +      ||     | +|| +|+|+|++ ||+| | +  +
347 NVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIERE 406

401 VPFRLKSSFKNYYTIVTEAPLDREAGDSYTLTVVARDRGEPALSTSKSIQVQVSDVNDNA 460
    ||| ||+ + | | + | + || |    ++  +|| | |+|+|+ +  ++|++ | ||| 
407 VPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNP 466

461 PRFSQPVYDVYVTENNVPGAYIYAVSATDRDEGANAQLAYSILECQIQGMSVFTYVSINS 520
    | |+||| ++ |+|||  | |+  +|||| | | || + | +      | +  ++  ++ 
467 PIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQL------GPNA-SFFDLDR 519

521 ENGYLYALRSFDYEQLKDFSFQVEARDAGSPQALAGNATVNILIVDQNDNAPAIVAPLPG 580
    + | | | | || |+ + | | | ||| |+|  |   | | + ++|+|||+|        
520 KTGVLTASRVFDREEQERFIFTVTARDNGTP-PLQSQAAVIVTVLDENDNSPKFT---HN 575

581 RNGTPAREVLPRSAEPGYLLTRVAAVDADDGENARLTYSIVRGNEMNLFRMDWRTGELRT 640
           | ||+ +  |     +   ||| |||  +| ||+  |+   | +|  +| +++
576 HFQFFVSENLPKYSTVGV----ITVTDADAGENKAVTLSILNDNDN--FVLDPYSGVIKS 629

641 ARRVPAKRDPQRPYELVIEVRDHGQPPLSSTATLVVQLVD 680
       |   |+ |  |   ++  | |||| |||| + + ++|
630 --NVSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMD 667