Affine Alignment
 
Alignment between PCDHB9 (top ENST00000316105.7 797aa) and PCDHGB3 (bottom ENST00000576222.2 929aa) score 29735

011 QRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELAARGTRVVSDD 070
    ||++|||||   +  | |   ||++ || ++|| | |||||||   |+|  |  ||+++ 
013 QRRMLFLFLLSLLDQALSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAE- 071

071 NKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAELRVRDINDHS 130
     |++  +    |||| ++++|||++|| |  |+| |+++ + |   +   + ++||||+ 
072 -KKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNP 130

131 PVFRHKEMVLKISENTAEGTAFRLERAQDPDEGHNSIQNYTISSNSFFHIKISGSDEGMI 190
    | |      |+|||    |  | || ||||| | ||+| | +| +  | +    + +|  
131 PTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSR 190

191 YPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNVPQFAQALYETQ 250
    ||||||   ||||||    | |||+||| |||| |+ ||++| | ||| | | | +|   
191 YPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVN 250

251 APENSPVGSLIVKVSAGDADSGVNAEVSYSFFDASEDILTTFQINPFSGEIFLRELLDYE 310
      || | || ++|| | | | |+|||+ |+| +  +++   |+++  +||+     ||+|
251 VAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFE 310

311 LVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIISSLSNSVAENSP-GIVLAVFK 369
      +|| | ++| |||  +| | | | + | ||| ||+ ++| |  + |++  |  +|+ |
311 ERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIK 370

370 IKDRDSGENGKTICYVQDNLPFFLKPSVDNFYILMTEGALDRESKAEYNITITVTDLGTP 429
      | ||| ||+ +| ++ | || +     | | |+|+||||||   |||+||| || | |
371 THDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNP 430

430 RLKTEHSITLQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 489
     | +  +||| + ||||| | | | |||+ | ||| |   |  | |+| | | |  |+| 
431 PLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYY 490

490 LLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFDFRVGASDRGSPALSSEALVRV 549
    ++        |+| ||++| +| +|| |+ |+| |+||+  + | |+||| ||+   +||
491 IVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRV 550

550 LVLDANDNSPFVLYPL--QNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLL 607
    || | |||+| ||||     |||   ++|||+|||||||||||||| ||| |||||| ++
551 LVDDRNDNAPLVLYPALGPEGSA-LFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIV 609

608 KATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFS 667
    +|+||||| +    ||||||| | +|+||+ ||+| |+| |+ | |||  ||++  |   
610 QASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQ 669

668 --QPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAASVG-- 723
      || |      |+  ||+ |  +|||||| +| ||||+|+| +++||   || |+ |  
670 EIQPDLS-DRPTPSDPQAE-LQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYF 727

724 RCSVPEGPFPGHLVDVSGTGTLFQSYQYEVCLTGGSETGEFKFLKPITPHLPP------H 777
    +  |     || |   |   ||   | |  |    |   |||||     +  |       
728 QPGVCFKTVPGVLPTYS-ERTL--PYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDE 784

778 RGGKEIEENSTLPNSFG 794
        |  +|  +|++ |
785 ASWFESNDNPEMPSNSG 801