Affine Alignment
 
Alignment between ZKSCAN4 (top ENST00000377294.3 545aa) and ZNF417 (bottom ENST00000312026.6 575aa) score 12274

303 QEGRLQRKQKNAIGSRRHYCHECGKSFAQSSGLTKHRRIHTGEKPYECEDCGKTFIGSSA 362
    |+| | + |+   | | ++| |||||| |      |+|+||||+||+| +|||+|     
335 QKGNLIQHQQGHTGERAYHCGECGKSFRQKFCFINHQRVHTGERPYKCGECGKSFGQKGN 394

363 LVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKTFSQSCSLLEH 422
    || ||| ||||+||||+|||| | + |+| +||| ||||+|| | +||| |++   || |
395 LVQHQRGHTGERPYECKECGKSFRYRSHLTEHQRLHTGERPYNCRECGKLFNRKYHLLVH 454

423 HKIHTGEKPYQCNMCGKAFRRNSHLLRHQRIH-GDKNVQNPEHGESWESQGRTESQWENT 481
     ++||||+|| | +||| |   + +  ||||| |++  +  | |+|+ |           
455 ERVHTGERPYACEVCGKLFGNKNCVTIHQRIHTGERPYECNECGKSFLSSSALHVHKRVH 514

482 EAPVSYKCNECERSFTRNRSLIEHQKIHTGEKPYQCDTCGKGFTRTSYLVQHQRSH 537
         |||+|| +||    |||+|++|||||+||+|  ||| | |+| |+ || ||
515 SGQKPYKCSECGKSFAECSSLIKHRRIHTGERPYECTKCGKTFQRSSTLLHHQSSH 570