Affine Alignment
 
Alignment between ZKSCAN4 (top ENST00000377294.3 545aa) and ZNF35 (bottom ENST00000396056.7 527aa) score 12369

281 HGKICHLREDIAQIPTHAEAGEQEGRLQRKQKNAIGSRRHYCHECGKSFAQSSGLTKHRR 340
    | || |  |   +     +|     +| | ||  |  + + |+||||+| +|| |  |+|
296 HQKI-HSLEKTFKCNECEKAFSYSSQLARHQKVHITEKCYECNECGKTFTRSSNLIVHQR 354

341 IHTGEKPYECEDCGKTFIGSSALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTG 400
    |||||||+ | |||| |  |+ |++||| |||||||||+|||| ||  |+|| ||| || 
355 IHTGEKPFACNDCGKAFTQSANLIVHQRSHTGEKPYECKECGKAFSCFSHLIVHQRIHTA 414

401 EKPYECDDCGKTFSQSCSLLEHHKIHTGEKPYQCNMCGKAFRRNSHLLRHQRIHGDKNVQ 460
    ||||+| +||| |||   |+ | +||+|+ || || |||||  +|+|| |||||      
415 EKPYDCSECGKAFSQLSCLIVHQRIHSGDLPYVCNECGKAFTCSSYLLIHQRIH------ 468

461 NPEHGESWESQGRTESQWENTEAPVSYKCNECERSFTRNRSLIEHQKIHTGEKPYQCDTC 520
                       | | |  | |||| ++| +  ||  ||+ |||||||+|+ |
469 -------------------NGEKP--YTCNECGKAFRQRSSLTVHQRTHTGEKPYECEKC 507

521 GKGFTRTSYLVQHQRSHV 538
    |  |   |+|++| |+|+
508 GAAFISNSHLMRHHRTHL 525