Affine Alignment
 
Alignment between PCDHGA2 (top ENST00000394576.3 932aa) and PCDHB10 (bottom ENST00000239446.6 800aa) score 30723

011 RKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRG 070
    ++ ||  ||   +  | +|  |||| || ++|||| |+||||||    || +| |+||  
011 QRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELAARGTRVVSDD 070

071 RSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNA 130
      |   |+  +|+|+|  ++|||+||    ||+| | ||++|   ||  |+ + ||||+|
071 NKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAELRVRDINDHA 130

131 PRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNK 190
    | |  +|  ||||| |  |    |+ | | | | | +| | ++||  | +++  | +|  
131 PVFQDKETVLKISENTAEGTAFRLERAQDPDGGLNGIQNYTISPNSFFHINISGGDEGMI 190

191 YPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRIS 250
    ||||||+++|||||+    | | | ||| |  |||| + + ||| ||||| | |  |   
191 YPELVLDKALDREEQGELSLTLTALDGGSPSRSGTSTVRIVVLDVNDNAPQFAQALYETQ 250

251 IPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYE 310
     |||+ +|  |+ | | | | |  |+| |    +       |++   |||+ + + ||||
251 APENSPIGFLIVKVWAEDVDSGVNAEVSYSFFDASENIRTTFQINPFSGEIFLRELLDYE 310

311 DATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFN 370
        ++|+|+| || ||  | +|+| ||| ||| ||  ++| ++||+|+| | | + +| 
311 LVNSYKINIQAMDGGGLSARCRVLVEVLDTNDNPPELIVSSFSNSVAENS-PETPLAVFK 369

371 VHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNP 430
    ++|||||+|    | + |+||| |+ ||+|+| |+|  |||||  + ||||+|  | | |
370 INDRDSGENGKMVCYIQENLPFLLKPSVENFYILITEGALDREIRAEYNITITVTDLGTP 429

431 SLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYS 490
     | |+ +| + |+|+|||||||++|||+ ++ |||     + ||+| | ||  || ||||
430 RLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 489

491 FAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSL 550
             ||+| +|||+| | |+|||| ||| |+  +  | | | |+| ||    + +
490 LLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALVRV 549

551 FVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLK 610
     ||| |||+| +|||      +   || ||+|||||||||||||| |||||||||| |||
550 LVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608

611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPD 670
    |+||||| |  | ||||||| | +||| |  ||| ++|+|+|| ||| || + + |    
609 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHLLLVDGFSQ 668

671 ILADLGSLEPSAIPNDSD-LTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASG 729
        |    |+    ++| ||+|||||+|+|| +||  |++ +| || |  +||      
669 PYLPLPEAAPAQAQAEADLLTVYLVVALASVSSLFLLSVLLFVAVRLCR--RSRAASVGR 726

730 GSL-TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYAD 777
     |+  |    | | | |     |+| +|| ||     |   | +|  +|
727 CSVPEGPFPGHLVDVRGAETLSQSYQYEVCLTGGPGTSEFKFLKPVISD 775