Affine Alignment
 
Alignment between PCDHGA2 (top ENST00000394576.3 932aa) and PCDHB12 (bottom ENST00000239450.4 795aa) score 30495

014 VLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQ 073
    ||| |+|  + +| +    + | ||+  ||||||+|| ||||   |+ +| |+||    +
014 VLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDNKE 073

074 LFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRF 133
       |+  +| |+    +||||||  + ||+| | +|+++      +|+++ ||||++| |
074 CLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSPVF 133

134 GVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPE 193
      +|+ |+| | +  |    |++| | ||| ||++ | +||| || + +|   |  ||||
134 LEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKYPE 193

194 LVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPE 253
    |||+++|| ||      +| | ||| |  |||+ + | |+| |||+| | |  | + | |
194 LVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKILE 253

254 NTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDAT 313
    |+++|+ ++||+| | | |  +++ |    +  +  + ||+   ||++|+   ||+|   
254 NSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEAIE 313

314 FHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHD 373
     + | |+| || ||  ++ | + |+||||||||  ++| || + |++ | |++ +| + |
314 SYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT-PETVVMVFRIRD 372

374 RDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLS 433
    |||| |    ||+|||+|| |+ ||+||| | | | ||||  + ||||+|  | | | | 
373 RDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRLK 432

434 TDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAE 493
    |+ +| + |+|+|||||||++|||+ ++ |||     + |++| | ||  || | ||   
433 TEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLLP 492

494 DTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVL 553
          ||+| +|||+| | |+|||| ||| |+  |  | | | |+| |||   + + ||
493 SQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLVL 552

554 DQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASE 613
    | |||+| +|||      +   || | +|||||||||||||| |||||||||| ||||+|
553 DANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611

614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILA 673
    |||| |  | ||||||| | +||| |  ||| ++|+|+|| ||| || | + |       
612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671

674 DLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSL- 732
     |    |+    || ||+|||||+|+|| +||  |++ +| || |  +||       |+ 
672 PLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAAPVGRCSVP 728

733 TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
     |    | | | |     |+| +|| +|  || +   | +|
729 EGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKP 769