Affine Alignment
 
Alignment between PCDHGA2 (top ENST00000394576.3 932aa) and PCDHB13 (bottom ENST00000341948.6 798aa) score 31445

001 MAALQKLPHCRKLVLLCFLLATLWEARAGQIR-YSVREEIDRGSFVGNIAKDLGLEPLAL 059
    | |  ||   ++ ||  |||  |  | | + | ||| || +  ||| |+|||||||    
001 MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREF 060

060 AEQGVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSV 119
    + +|||+||||      ||  +  |+   ++|||+||  + ||+| | +|||     +  
061 SRRGVRVVSRGNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQA 120

120 EVEITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFS 179
    |+++ ||||++| |  +++ +|+||++ ||   ||||| | |||+| ++ | ++|| +| 
121 ELQVIDINDHSPVFLDKQMLVKVSESSPPGTTFPLKNAEDLDVGQNNIENYIISPNSYFR 180

180 LDVRRGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNA 239
    +  |+ +|| |||||||+++|||||||   | | | ||| |  |||+++ ++||| ||||
181 VLTRKRSDGRKYPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNA 240

240 PVFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSG 299
    | | || ||+ | |++ ||  ++ |+||| | |   ++ | | ++  |  + |++   +|
241 PEFEQPFYRVQISEDSPVGFLVVKVSATDVDTGVNGEISYSLFQASEEIGKTFKINPLTG 300

300 ELTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSED 359
    |+ + | ||+|    +|++|||+|      +  |++ |+||||+|||  |++ || + |+
301 EIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPEN 360

360 SLPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYN 419
    + | |++ ||+| | |||+|   +||+ ||||| | || +|+| |+| | ||||  + ||
361 A-PETVVALFSVSDLDSGENGKISCSIQEDLPFLL-KSAENFYTLLTERPLDRESRAEYN 418

420 ITLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDP 479
    ||+|  | | | | |  ++ + +||+|||||||++|||+ ++ |||     + ||+| | 
419 ITITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRENNSPALHIRSVSATDR 478

480 DSNDNAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGN 539
    ||  || ||||         ||+| +|||+| | |+|||| ||| |+  |  | | | |+
479 DSGTNAQVTYSLLPPQDPHLPLTSLVSINADNGHLFALRSLDYEALQGFQFRVGASDHGS 538

540 PPLSSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSG 599
    | |||   + + ||| |||+| +|||      +   || ||+|||||||||||||| |||
539 PALSSEALVRVVVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSG 597

600 QNAWLSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVT 659
    ||||||| ||||+| ||| |  | ||||||| | +||| |  ||| ++|+|+|| ||| |
598 QNAWLSYQLLKATELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATAT 657

660 LTVAVADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRW 719
    | | + |        |    |+    |  ||+|||||+|+|| +||  |++ +| || | 
658 LHVLLVDGFSQPYLPLPEAAPTQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR- 715

720 HKSRLLQASGGSL---TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
       |   || |      |    | | + | |   |+| +|| |   |  +   | +|
716 ---RSRAASVGRCLVPEGPLPGHLVDMSGTRTLSQSYQYEVCLAGGSGTNEFKFLKP 769