Affine Alignment
 
Alignment between PCDHGA7 (top ENST00000518325.2 932aa) and PCDHGB3 (bottom ENST00000576222.2 929aa) score 43700

014 FLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQ 073
    ||||+|     +| +  | |++ || |+|| ||++|||||    +|  | +|+|+    +
020 FLLSLL----DQALSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIA--EKK 073

074 LFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRF 133
     | ++  +|+|+ + |||||||| + + |++ | ++ |  +| + + | | ||||| | |
074 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133

134 LTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPE 193
          ++| |    |  | |  | ||||| |||| | |||+ ||||  +   | ++|||
134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193

194 LVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPE 253
    |||+  |||||+  ||||||| |||+| || |  |+| | | ||+ |||+   |+| | |
194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253

254 NVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETA 313
    |+| |+ +| | |||+|||+| |+ |+|  |  ++ ++| |+| |||++|+  ||+||  
254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313

314 FYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQD 373
     | + |+|+||       || | + | ||||||+|+ | |  | ||  ||| +||    |
314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373

374 RDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLS 433
     ||| |||+ | +  | |||+ +   | |||||   |||| +  ||+|+ ||| | ||||
374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433

434 RETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAE 493
        | + + | ||| | |  +||+|++||||| ||||  | | | |   |  ++| +  
434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493

494 DTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVL 553
      ++   +|||||+++ +||++| ++||+||||  +| + | | | | ||+|+|| + | 
494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553

554 DQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASE 613
    |+||| | +|||||  +||   ++ ||||||||||||||||| ||| |||||| +++|||
554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613

614 PGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLA 673
    ||||++|| |||||||| | ||+| +| |+| |+| || |||||| | +  |||+ |+  
614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673

674 DLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLA 733
    || |  |+      +|  +||||+| +| +||  |++ ++||||    ||   |+||   
674 DL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLR--CSSR--PATEGYFQ 728

734 NVPTSHFVGMDGVQAFLQTYS-----HEVSLTADSRKSHLIFPQPNYVDMLISQESCEKN 788
      |   |  + ||   | |||     +  +  | |  |+  |   |     |  |+    
729 --PGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLN-----IKAENAAPQ 778

789 DSLLTSVDFQECKEN--LPS-----IQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 841
    | |     + |  +|  +||      +|||||||||||||||||||||||||||||||||
779 DLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 838

842 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 901
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
839 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 898

902 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
    |||||||||||||||||||||||||||||||
899 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929