Affine Alignment
 
Alignment between PCDHA3 (top ENST00000522353.3 950aa) and PCDHB8 (bottom ENST00000239444.4 801aa) score 27683

014 LLLSLLLLAASEVGSGQ-LHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKRHG 072
    +| | |||  |  |+ +   ||| || +  +||  +|+|||||  |   |  || |+ + 
014 VLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREFSRRGVRVVSRGNK 073

073 DLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDNAPV 132
      |++| +   | +| ++|||+||| +  | +  +|+++ | + |  |++| ||||++||
074 LHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQAELQVIDINDHSPV 133

133 F---PMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDEEI 189
    |    | ||   +|||  ||+ | |+ | | ||| |++  | +    || +  ++  +  
134 FLDKQMLVK---VSESSPPGTAFPLKNAEDLDIGQNNIENYIISPNSYFRVLTRKRSDGR 190

190 KSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIYKV 249
    |   ||| | |+||+  +  | +||+||| |  +|| |+ | |+||||||| ||+  |+|
191 KYPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVVDVNDNAPEFEQPFYRV 250

250 RLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGNID 309
    ++ |++|   ||| |+|||+| ||| +|+||     | +|   | +| + |+| +|  +|
251 QISEDSPISFLVVKVSATDVDTGVNGEISYSL-FQASDEISKTFKVDFLTGEIRLKKQLD 309

310 FEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLSTVI 369
    ||+ +|||+ +|| | |    |  ||||++++|+||+ ||+ + + + |+ |++|  ||+
310 FEKFQSYEVNIEARDAGG--FSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPENAP-ETVV 366

370 ALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTARD 429
    || |||| ||| ||+++||+   +|| | |+  |+|+|+ ++|||||| + | + +|  |
367 ALFSVSDLDSGENGKISCSIQEDLPFLLKSSVGNFYTLLTETPLDRESRAEYNVTITVTD 426

430 GGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQENAL 489
     |+| |    +++| |+|||||||||+|+ ||+||+||| |  || +||| | |+  || 
427 LGTPRLTTHLNMTVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQ 486

490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
    |+|||+  +     |+| ||++ ++| ++||+ ||+| |+  +|+| | | | | | |  
487 VTYSLLPPQDPHLPLASLVSINTDNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEA 546

550 TLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
     ++| ||| |||+| +| |   |     +|||||+   |++| || ||| ||| ||||||
547 LVRVLVLDANDNSPFVLYPLQNG-SAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSY 605

610 EL----QPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATV 665
    +|    +||       | |  + ||+ | | | | || + ||+|||||+|||  +||||+
606 QLLKATEPGL------FGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPCSATATL 659

666 LVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTAL---R 722
     | ||+    |      +| | |   +|    |||+||+ +|||| + ++||+ |+   |
660 HVLLVDGFSQPYLPLPEAAPAQGQADSL---TVYLVVALASVSSLFLFSVLLFVAVLLCR 716

723 CSAPPTEGDC----GPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLP 777
     |   + | |    ||    ||     |+ | ||  |  ||   |    +     | ||
717 RSRAASVGRCSVPEGPFPGHLV--DVRGTGSLSQNYQYEVCLAGGSGTNEFQLLKPVLP 773