UCSC Human Gene Sorter
 
genome assembly search
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#
Name
VisiGene
BLASTP
E-Value
Genome Position
Description
1LINC01783n/a
n/a
n/a
n/a
n/achr1 16,534,767long intergenic non-protein coding RNA 1783 (from RefSeq NR_135764.1)
2RNU1-6Pn/a
n/a
n/a
n/a
n/achr1 16,534,152RNA, U1 small nuclear 6, pseudogene (from HGNC RNU1-6P)
3FGF14-IT1n/a
n/a
n/a
n/a
n/achr13 102,343,423FGF14 intronic transcript 1 (from RefSeq NR_036486.1)
4SPATA21n/a
n/a
n/a
n/a
n/achr1 16,418,033spermatogenesis associated 21, transcript variant 1 (from RefSeq NM_198546.1)
5FKBP6P2n/a
n/a
n/a
n/a
n/achr7 75,394,323FKBP6P2 (from geneSymbol)
6CCDC169n/a
n/a
n/a
n/a
n/achr13 36,264,294coiled-coil domain containing 169, transcript variant 1 (from RefSeq NM_001144981.3)
7CRPPA-AS1n/a
n/a
n/a
n/a
n/achr7 16,240,546CRPPA antisense RNA 1, transcript variant 1 (from RefSeq NR_038946.1)
8ENSG00000241358n/a
    
    
     
n/achr3 146,406,158ENSG00000241358 (from geneSymbol)
9ENSG00000293191n/a
    
    
     
n/achr3 146,403,983ENSG00000293191 (from geneSymbol)
10KCNV2n/a
    
    
     
n/achr9 2,723,773potassium voltage-gated channel modifier subfamily V member 2 (from RefSeq NM_133497.4)
11CSNK1A1P1n/a
    
    
     
n/achr15 36,817,623casein kinase 1 alpha 1 pseudogene 1 (from HGNC CSNK1A1P1)
12KCNQ2-AS1n/a
    
    
     
n/achr20 63,448,690KCNQ2-AS1 (from geneSymbol)
13KARS1P2n/a
    
    
     
n/achr13 113,131,235KARS1P2 (from geneSymbol)
14UTF1n/a
    
    
     
n/achr10 133,230,887undifferentiated embryonic cell transcription factor 1 (from RefSeq NM_003577.3)
15LINC01500n/a
n/a
n/a
n/a
n/achr14 58,832,081long intergenic non-protein coding RNA 1500 (from HGNC LINC01500)
16FAM225Bn/a
    
    
     
n/achr9 113,106,833family with sequence similarity 225 member B (non-protein coding) (from HGNC FAM225B)
17ENSG00000251536n/a
    
    
     
n/achr12 129,853,576ENSG00000251536 (from geneSymbol)
18TRBV7-1n/a
    
    
     
n/achr7 142,332,441Probable non-functional open reading frame (ORF) of V region  of the variable domain of T cell receptor (TR) beta chain  (PubMed:24600447). Non-functional ORF generally cannot participate in  the synthesis of a productive T cell receptor (TR) chain due to altered  V-(D)-J or switch recombination and/or splicing site (at mRNA level)  and/or conserved amino acid change (protein level) (PubMed:9619395).  Alpha-beta T cell receptors are antigen specific receptors which are  essential to the immune response and are present on the cell surface of  T lymphocytes. Recognize peptide-major histocompatibility (MH) (pMH)  complexes that are displayed by antigen presenting cells (APC), a  prerequisite for efficient T cell adaptive immunity against pathogens  (PubMed:25493333). Binding of alpha-beta TR to pMH complex initiates  TR-CD3 clustering on the cell surface and intracellular activation of  LCK that phosphorylates the ITAM motifs of CD3G, CD3D, CD3E and CD247  enabling the recruitment of ZAP70. In turn ZAP70 phosphorylates LAT,  which recruits numerous signaling molecules to form the LAT  signalosome. The LAT signalosome propagates signal branching to three  major signaling pathways, the calcium, the mitogen-activated protein  kinase (MAPK) kinase and the nuclear factor NF-kappa-B (NF-kB)  pathways, leading to the mobilization of transcription factors that are  critical for gene expression and essential for T cell growth and  differentiation (PubMed:23524462). The T cell repertoire is generated  in the thymus, by V-(D)-J rearrangement. This repertoire is then shaped  by intrathymic selection events to generate a peripheral T cell pool of  self-MH restricted, non-autoaggressive T cells. Post-thymic interaction  of alpha-beta TR with the pMH complexes shapes TR structural and  functional avidity (PubMed:15040585). (from UniProt A0A0A6YYK4)
19LINC01115n/a
    
    
     
n/achr2 739,876long intergenic non-protein coding RNA 1115 (from HGNC LINC01115)
20LINC02843n/a
    
    
     
n/achr9 88,639,678LINC02843 (from geneSymbol)
21LDHAL6An/a
n/a
n/a
n/a
n/achr11 18,467,728lactate dehydrogenase A like 6A, transcript variant 1 (from RefSeq NM_144972.5)
22LRRIQ3n/a
n/a
n/a
n/a
n/achr1 74,112,095leucine rich repeats and IQ motif containing 3, transcript variant 2 (from RefSeq NM_001322315.2)
23MIR663AHGn/a
n/a
n/a
n/a
n/achr20 26,198,183MIR663A host gene (from HGNC MIR663AHG)
24MIR663An/a
n/a
n/a
n/a
n/achr20 26,208,232microRNA 663a (from RefSeq NR_030386.1)
25LINC01337n/a
    
    
     
n/achr5 80,615,573long intergenic non-protein coding RNA 1337 (from RefSeq NR_125754.1)
26LINC01704n/a
n/a
n/a
n/a
n/achr1 158,136,347long intergenic non-protein coding RNA 1704 (from HGNC LINC01704)
27GOLGA6GPn/a
n/a
n/a
n/a
n/achr15 78,731,930GOLGA6GP (from geneSymbol)
28LINC02359n/a
    
    
     
n/achr12 126,136,820long intergenic non-protein coding RNA 2359, transcript variant 5 (from RefSeq NR_186740.1)
29TGIF2LXn/a
n/a
n/a
n/a
n/achrX 89,922,395TGFB induced factor homeobox 2 like X-linked (from RefSeq NM_138960.4)
30ENSG00000279359n/a
n/a
n/a
n/a
n/achr10 80,251,915ENSG00000279359 (from geneSymbol)
31ENSG00000285781n/a
n/a
n/a
n/a
n/achr10 31,363,424ENSG00000285781 (from geneSymbol)
32LINC01859n/a
    
    
     
n/achr19 23,023,954long intergenic non-protein coding RNA 1859 (from HGNC LINC01859)
33NCKAP5-AS1n/a
    
    
     
n/achr2 132,923,525NCKAP5 antisense RNA 1 (from RefSeq NR_135572.1)
34SSBL5Pn/a
    
    
     
n/achr7 12,471,948SSBL5P (from geneSymbol)
35ENSG00000258928n/a
    
    
     
n/achr14 51,917,358uncharacterized LOC102723604 (from RefSeq NR_126331.1)
36LINC01517n/a
n/a
n/a
n/a
n/achr10 28,842,708long intergenic non-protein coding RNA 1517 (from HGNC LINC01517)
37ENSG00000231188n/a
    
    
     
n/achr10 100,340,976ENSG00000231188 (from geneSymbol)
38RBMX2P5n/a
n/a
n/a
n/a
n/achr5 80,332,057RNA binding motif protein, X-linked 2 pseudogene 5 (from HGNC RBMX2P5)
39USP50n/a
n/a
n/a
n/a
n/achr15 50,523,614ubiquitin specific peptidase 50 (from RefSeq NM_203494.5)
40GALNT16-AS1n/a
    
    
     
n/achr14 69,198,556GALNT16-AS1 (from geneSymbol)
41SF3B4P1n/a
    
    
     
n/achr14 67,199,694splicing factor 3b, subunit 4 pseudogene 1 (from HGNC SF3B4P1)
42LINC01676n/a
n/a
n/a
n/a
n/achr1 105,603,325long intergenic non-protein coding RNA 1676 (from HGNC LINC01676)
43RPS17P15n/a
    
    
     
n/achr11 111,105,721ribosomal protein S17 pseudogene 15 (from HGNC RPS17P15)
44LINC00343n/a
n/a
n/a
n/a
n/achr13 105,752,541long intergenic non-protein coding RNA 343 (from HGNC LINC00343)
45ARL2BPP3n/a
n/a
n/a
n/a
n/achr13 36,794,767ADP ribosylation factor like GTPase 2 binding protein pseudogene 3 (from HGNC ARL2BPP3)
46PRICKLE2-DTn/a
    
    
     
n/achr3 64,450,678PRICKLE2 divergent transcript, transcript variant 2 (from RefSeq NR_183714.1)
47RHOXF2n/a
n/a
n/a
n/a
n/achrX 120,162,121Rhox homeobox family member 2 (from RefSeq NM_032498.3)
48ENSG00000216621n/a
n/a
n/a
n/a
n/achr6 149,936,373ENSG00000216621 (from geneSymbol)
49CBY3n/a
    
    
     
n/achr5 179,679,797chibby family member 3 (from RefSeq NM_001164444.2)
50RPL36P20n/a
    
    
     
n/achr3 41,955,604ribosomal protein L36 pseudogene 20 (from HGNC RPL36P20)