Assay Summary H3K4me2 Summary Track Settings
 
Roadmap Epigenome H3K4me2 Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF005NIB_trophoblast_cell  ENCFF005NIB trophoblast_cell by ChIP-seq    Data format 
     ENCFF012IME_mesenchymal_stem_cell  ENCFF012IME mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF017DDZ_trophoblast_cell  ENCFF017DDZ trophoblast_cell by ChIP-seq    Data format 
     ENCFF022LOU_H9  ENCFF022LOU H9 by ChIP-seq    Data format 
     ENCFF038RUV_skeletal_muscle_satellite_cell  ENCFF038RUV skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF084LJK_neuronal_stem_cell  ENCFF084LJK neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF115ZHV_H9  ENCFF115ZHV H9 by ChIP-seq    Data format 
     ENCFF116QQC_mesenchymal_stem_cell  ENCFF116QQC mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF123BWD_mesenchymal_stem_cell  ENCFF123BWD mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF127JHL_mesendoderm  ENCFF127JHL mesendoderm by ChIP-seq    Data format 
     ENCFF128VRQ_H9  ENCFF128VRQ H9 by ChIP-seq    Data format 
     ENCFF135VUB_IMR-90  ENCFF135VUB IMR-90 by ChIP-seq    Data format 
     ENCFF159OXV_trophoblast_cell  ENCFF159OXV trophoblast_cell by ChIP-seq    Data format 
     ENCFF162HGN_skeletal_muscle_satellite_cell  ENCFF162HGN skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF166XCD_skeletal_muscle_satellite_cell  ENCFF166XCD skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF178OJL_trophoblast_cell  ENCFF178OJL trophoblast_cell by ChIP-seq    Data format 
     ENCFF195RXD_IMR-90  ENCFF195RXD IMR-90 by ChIP-seq    Data format 
     ENCFF203SHR_skeletal_muscle_satellite_cell  ENCFF203SHR skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF206XNC_mesendoderm  ENCFF206XNC mesendoderm by ChIP-seq    Data format 
     ENCFF225UWV_H1  ENCFF225UWV H1 by ChIP-seq    Data format 
     ENCFF246HCB_mesendoderm  ENCFF246HCB mesendoderm by ChIP-seq    Data format 
     ENCFF247QVJ_neuronal_stem_cell  ENCFF247QVJ neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF260TTI_mesendoderm  ENCFF260TTI mesendoderm by ChIP-seq    Data format 
     ENCFF262ZUE_trophoblast_cell  ENCFF262ZUE trophoblast_cell by ChIP-seq    Data format 
     ENCFF282RME_skeletal_muscle_satellite_cell  ENCFF282RME skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF292CHU_skeletal_muscle_satellite_cell  ENCFF292CHU skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF317ZMM_H9  ENCFF317ZMM H9 by ChIP-seq    Data format 
     ENCFF349YCN_mesendoderm  ENCFF349YCN mesendoderm by ChIP-seq    Data format 
     ENCFF360LTW_IMR-90  ENCFF360LTW IMR-90 by ChIP-seq    Data format 
     ENCFF366XON_mesendoderm  ENCFF366XON mesendoderm by ChIP-seq    Data format 
     ENCFF374ZLT_mesendoderm  ENCFF374ZLT mesendoderm by ChIP-seq    Data format 
     ENCFF385JGI_trophoblast_cell  ENCFF385JGI trophoblast_cell by ChIP-seq    Data format 
     ENCFF400CAD_IMR-90  ENCFF400CAD IMR-90 by ChIP-seq    Data format 
     ENCFF407ZUR_mesenchymal_stem_cell  ENCFF407ZUR mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF440QGE_IMR-90  ENCFF440QGE IMR-90 by ChIP-seq    Data format 
     ENCFF453KGG_mesenchymal_stem_cell  ENCFF453KGG mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF460QXR_H1  ENCFF460QXR H1 by ChIP-seq    Data format 
     ENCFF476ZAJ_mesenchymal_stem_cell  ENCFF476ZAJ mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF495PGR_skeletal_muscle_satellite_cell  ENCFF495PGR skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF502TJG_H1  ENCFF502TJG H1 by ChIP-seq    Data format 
     ENCFF503FTV_trophoblast_cell  ENCFF503FTV trophoblast_cell by ChIP-seq    Data format 
     ENCFF503IEK_skeletal_muscle_satellite_cell  ENCFF503IEK skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF503YBN_skeletal_muscle_satellite_cell  ENCFF503YBN skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF512SWF_IMR-90  ENCFF512SWF IMR-90 by ChIP-seq    Data format 
     ENCFF526UFD_IMR-90  ENCFF526UFD IMR-90 by ChIP-seq    Data format 
     ENCFF545TDN_mesenchymal_stem_cell  ENCFF545TDN mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF554PSM_mesendoderm  ENCFF554PSM mesendoderm by ChIP-seq    Data format 
     ENCFF557MWB_H1  ENCFF557MWB H1 by ChIP-seq    Data format 
     ENCFF578JCR_mesenchymal_stem_cell  ENCFF578JCR mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF580GDA_H9  ENCFF580GDA H9 by ChIP-seq    Data format 
     ENCFF581ELY_H1  ENCFF581ELY H1 by ChIP-seq    Data format 
     ENCFF586RUT_trophoblast_cell  ENCFF586RUT trophoblast_cell by ChIP-seq    Data format 
     ENCFF587HUB_trophoblast_cell  ENCFF587HUB trophoblast_cell by ChIP-seq    Data format 
     ENCFF591MGW_mesenchymal_stem_cell  ENCFF591MGW mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF596AMA_skeletal_muscle_satellite_cell  ENCFF596AMA skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF603WMX_mesenchymal_stem_cell  ENCFF603WMX mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF630RSV_trophoblast_cell  ENCFF630RSV trophoblast_cell by ChIP-seq    Data format 
     ENCFF631KQT_mesenchymal_stem_cell  ENCFF631KQT mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF649WBU_H1  ENCFF649WBU H1 by ChIP-seq    Data format 
     ENCFF651TOH_neuronal_stem_cell  ENCFF651TOH neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF652IHX_H9  ENCFF652IHX H9 by ChIP-seq    Data format 
     ENCFF708ORQ_H9  ENCFF708ORQ H9 by ChIP-seq    Data format 
     ENCFF713WKN_H1  ENCFF713WKN H1 by ChIP-seq    Data format 
     ENCFF723NTH_trophoblast_cell  ENCFF723NTH trophoblast_cell by ChIP-seq    Data format 
     ENCFF751UTW_H9  ENCFF751UTW H9 by ChIP-seq    Data format 
     ENCFF753WKE_mesendoderm  ENCFF753WKE mesendoderm by ChIP-seq    Data format 
     ENCFF758SQB_H9  ENCFF758SQB H9 by ChIP-seq    Data format 
     ENCFF778CLA_IMR-90  ENCFF778CLA IMR-90 by ChIP-seq    Data format 
     ENCFF813DLA_H1  ENCFF813DLA H1 by ChIP-seq    Data format 
     ENCFF820VFH_IMR-90  ENCFF820VFH IMR-90 by ChIP-seq    Data format 
     ENCFF822YAQ_H9  ENCFF822YAQ H9 by ChIP-seq    Data format 
     ENCFF848AUV_H1  ENCFF848AUV H1 by ChIP-seq    Data format 
     ENCFF855RJA_mesendoderm  ENCFF855RJA mesendoderm by ChIP-seq    Data format 
     ENCFF860NVB_H1  ENCFF860NVB H1 by ChIP-seq    Data format 
     ENCFF864LXW_H1  ENCFF864LXW H1 by ChIP-seq    Data format 
     ENCFF866QOG_skeletal_muscle_satellite_cell  ENCFF866QOG skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF868WIG_H9  ENCFF868WIG H9 by ChIP-seq    Data format 
     ENCFF873AJM_skeletal_muscle_satellite_cell  ENCFF873AJM skeletal_muscle_satellite_cell by ChIP-seq    Data format 
     ENCFF883PKR_mesenchymal_stem_cell  ENCFF883PKR mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF885OUW_mesendoderm  ENCFF885OUW mesendoderm by ChIP-seq    Data format 
     ENCFF890ATK_H9  ENCFF890ATK H9 by ChIP-seq    Data format 
     ENCFF894IHE_neuronal_stem_cell  ENCFF894IHE neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF900PRJ_H1  ENCFF900PRJ H1 by ChIP-seq    Data format 
     ENCFF920WEO_IMR-90  ENCFF920WEO IMR-90 by ChIP-seq    Data format 
     ENCFF921FLW_IMR-90  ENCFF921FLW IMR-90 by ChIP-seq    Data format 
     ENCFF942BWN_mesendoderm  ENCFF942BWN mesendoderm by ChIP-seq    Data format 
     ENCFF993MGL_IMR-90  ENCFF993MGL IMR-90 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF