Sample Summary B_cell Summary Track Settings
 
Roadmap Epigenome B_cell Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
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Transform function:Transform data points by: 
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Graph configuration help
All subtracks:
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     ENCFF011FDY_H3K27me3  ENCFF011FDY H3K27me3    Data format 
     ENCFF011JWL_polyA_plus_RNA-seq  ENCFF011JWL polyA_plus_RNA-seq    Data format 
     ENCFF019RQC_H3K27me3  ENCFF019RQC H3K27me3    Data format 
     ENCFF040CCG_H3K9me3  ENCFF040CCG H3K9me3    Data format 
     ENCFF046VLL_H3K27me3  ENCFF046VLL H3K27me3    Data format 
     ENCFF063OBK_H3K4me3  ENCFF063OBK H3K4me3    Data format 
     ENCFF065LSI_H3K36me3  ENCFF065LSI H3K36me3    Data format 
     ENCFF076DWS_H3K27me3  ENCFF076DWS H3K27me3    Data format 
     ENCFF084OLB_H3K4me1  ENCFF084OLB H3K4me1    Data format 
     ENCFF089VAB_H3K27ac  ENCFF089VAB H3K27ac    Data format 
     ENCFF092EJV_H3K36me3  ENCFF092EJV H3K36me3    Data format 
     ENCFF104EQW_DNase-seq  ENCFF104EQW DNase-seq    Data format 
     ENCFF134KAD_DNase-seq  ENCFF134KAD DNase-seq    Data format 
     ENCFF144HYA_H3K36me3  ENCFF144HYA H3K36me3    Data format 
     ENCFF159WKL_H3K4me1  ENCFF159WKL H3K4me1    Data format 
     ENCFF177LSL_H3K27ac  ENCFF177LSL H3K27ac    Data format 
     ENCFF189KOK_H3K36me3  ENCFF189KOK H3K36me3    Data format 
     ENCFF204OSG_H3K9me3  ENCFF204OSG H3K9me3    Data format 
     ENCFF210NEN_polyA_plus_RNA-seq  ENCFF210NEN polyA_plus_RNA-seq    Data format 
     ENCFF220IWU_DNase-seq  ENCFF220IWU DNase-seq    Data format 
     ENCFF223HOG_H3K27me3  ENCFF223HOG H3K27me3    Data format 
     ENCFF292LTH_H3K36me3  ENCFF292LTH H3K36me3    Data format 
     ENCFF333UOZ_H3K36me3  ENCFF333UOZ H3K36me3    Data format 
     ENCFF341PFC_H3K36me3  ENCFF341PFC H3K36me3    Data format 
     ENCFF363XUH_H3K36me3  ENCFF363XUH H3K36me3    Data format 
     ENCFF385PQZ_H3K27me3  ENCFF385PQZ H3K27me3    Data format 
     ENCFF388NTJ_WGBS  ENCFF388NTJ WGBS    Data format 
     ENCFF412HWN_WGBS  ENCFF412HWN WGBS    Data format 
     ENCFF435QXY_H3K27ac  ENCFF435QXY H3K27ac    Data format 
     ENCFF462PAO_H3K9me3  ENCFF462PAO H3K9me3    Data format 
     ENCFF480VDY_H3K27me3  ENCFF480VDY H3K27me3    Data format 
     ENCFF535RPW_H3K9me3  ENCFF535RPW H3K9me3    Data format 
     ENCFF542ITD_H3K36me3  ENCFF542ITD H3K36me3    Data format 
     ENCFF570XSN_DNase-seq  ENCFF570XSN DNase-seq    Data format 
     ENCFF576IPB_H3K36me3  ENCFF576IPB H3K36me3    Data format 
     ENCFF584FTX_H3K27me3  ENCFF584FTX H3K27me3    Data format 
     ENCFF585HQA_H3K4me3  ENCFF585HQA H3K4me3    Data format 
     ENCFF587OQR_H3K36me3  ENCFF587OQR H3K36me3    Data format 
     ENCFF588PNQ_H3K4me3  ENCFF588PNQ H3K4me3    Data format 
     ENCFF592RSV_polyA_plus_RNA-seq  ENCFF592RSV polyA_plus_RNA-seq    Data format 
     ENCFF596FMR_polyA_plus_RNA-seq  ENCFF596FMR polyA_plus_RNA-seq    Data format 
     ENCFF598AEG_H3K4me3  ENCFF598AEG H3K4me3    Data format 
     ENCFF618YNB_H3K27me3  ENCFF618YNB H3K27me3    Data format 
     ENCFF625PVA_H3K27me3  ENCFF625PVA H3K27me3    Data format 
     ENCFF647TKC_H3K9me3  ENCFF647TKC H3K9me3    Data format 
     ENCFF663QCJ_H3K36me3  ENCFF663QCJ H3K36me3    Data format 
     ENCFF666LYZ_H3K36me3  ENCFF666LYZ H3K36me3    Data format 
     ENCFF682CXH_H3K4me3  ENCFF682CXH H3K4me3    Data format 
     ENCFF701UYQ_WGBS  ENCFF701UYQ WGBS    Data format 
     ENCFF706OBZ_H3K9me3  ENCFF706OBZ H3K9me3    Data format 
     ENCFF713JLD_H3K4me3  ENCFF713JLD H3K4me3    Data format 
     ENCFF733WHO_H3K4me3  ENCFF733WHO H3K4me3    Data format 
     ENCFF739GSK_H3K27me3  ENCFF739GSK H3K27me3    Data format 
     ENCFF755XOK_H3K9me3  ENCFF755XOK H3K9me3    Data format 
     ENCFF775QXE_H3K4me1  ENCFF775QXE H3K4me1    Data format 
     ENCFF776TBT_H3K4me3  ENCFF776TBT H3K4me3    Data format 
     ENCFF791QXM_DNase-seq  ENCFF791QXM DNase-seq    Data format 
     ENCFF801SYG_H3K36me3  ENCFF801SYG H3K36me3    Data format 
     ENCFF804GHX_H3K27me3  ENCFF804GHX H3K27me3    Data format 
     ENCFF807GVN_H3K4me3  ENCFF807GVN H3K4me3    Data format 
     ENCFF808DAI_H3K27me3  ENCFF808DAI H3K27me3    Data format 
     ENCFF824WXK_H3K27me3  ENCFF824WXK H3K27me3    Data format 
     ENCFF839WTM_H3K9me3  ENCFF839WTM H3K9me3    Data format 
     ENCFF840RUH_H3K4me1  ENCFF840RUH H3K4me1    Data format 
     ENCFF841UFW_H3K27me3  ENCFF841UFW H3K27me3    Data format 
     ENCFF851PJG_H3K4me3  ENCFF851PJG H3K4me3    Data format 
     ENCFF871WKM_H3K27me3  ENCFF871WKM H3K27me3    Data format 
     ENCFF877BXP_H3K4me3  ENCFF877BXP H3K4me3    Data format 
     ENCFF902ZWT_H3K4me3  ENCFF902ZWT H3K4me3    Data format 
     ENCFF908UFI_H3K36me3  ENCFF908UFI H3K36me3    Data format 
     ENCFF912XPS_H3K27me3  ENCFF912XPS H3K27me3    Data format 
     ENCFF914NKW_H3K9me3  ENCFF914NKW H3K9me3    Data format 
     ENCFF921RFR_H3K4me3  ENCFF921RFR H3K4me3    Data format 
     ENCFF928BKZ_H3K9me3  ENCFF928BKZ H3K9me3    Data format 
     ENCFF943QCA_H3K9me3  ENCFF943QCA H3K9me3    Data format 
     ENCFF944VXV_H3K27me3  ENCFF944VXV H3K27me3    Data format 
     ENCFF951MIP_H3K27me3  ENCFF951MIP H3K27me3    Data format 
     ENCFF951ZBV_H3K27ac  ENCFF951ZBV H3K27ac    Data format 
     ENCFF963ZWT_H3K4me3  ENCFF963ZWT H3K4me3    Data format 
     ENCFF968JMP_H3K36me3  ENCFF968JMP H3K36me3    Data format 
     ENCFF969HIB_H3K9me3  ENCFF969HIB H3K9me3    Data format 
     ENCFF974HCD_H3K4me3  ENCFF974HCD H3K4me3    Data format 
     ENCFF974TMB_H3K27me3  ENCFF974TMB H3K27me3    Data format 
     ENCFF984VCI_H3K4me3  ENCFF984VCI H3K4me3    Data format 
     ENCFF993MFJ_DNase-seq  ENCFF993MFJ DNase-seq    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:aorta
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF