Sample Summary ectodermal_cell Summary Track Settings
 
Roadmap Epigenome ectodermal_cell Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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All subtracks:
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     ENCFF008WQX_H3K4me3  ENCFF008WQX H3K4me3    Data format 
     ENCFF011AZA_polyA_plus_RNA-seq  ENCFF011AZA polyA_plus_RNA-seq    Data format 
     ENCFF016YGY_H3K27me3  ENCFF016YGY H3K27me3    Data format 
     ENCFF031FMS_polyA_plus_RNA-seq  ENCFF031FMS polyA_plus_RNA-seq    Data format 
     ENCFF063KKR_H3K4me3  ENCFF063KKR H3K4me3    Data format 
     ENCFF081XYH_polyA_plus_RNA-seq  ENCFF081XYH polyA_plus_RNA-seq    Data format 
     ENCFF085BMH_polyA_plus_RNA-seq  ENCFF085BMH polyA_plus_RNA-seq    Data format 
     ENCFF086SRN_polyA_plus_RNA-seq  ENCFF086SRN polyA_plus_RNA-seq    Data format 
     ENCFF086TVU_H3K27me3  ENCFF086TVU H3K27me3    Data format 
     ENCFF087KYU_H3K27ac  ENCFF087KYU H3K27ac    Data format 
     ENCFF089GOS_H3K4me3  ENCFF089GOS H3K4me3    Data format 
     ENCFF096CZT_polyA_plus_RNA-seq  ENCFF096CZT polyA_plus_RNA-seq    Data format 
     ENCFF111TON_H3K27me3  ENCFF111TON H3K27me3    Data format 
     ENCFF113DCV_H3K27ac  ENCFF113DCV H3K27ac    Data format 
     ENCFF114CGK_polyA_plus_RNA-seq  ENCFF114CGK polyA_plus_RNA-seq    Data format 
     ENCFF119QKW_H3K27me3  ENCFF119QKW H3K27me3    Data format 
     ENCFF121ZSV_H3K27me3  ENCFF121ZSV H3K27me3    Data format 
     ENCFF124IRY_polyA_plus_RNA-seq  ENCFF124IRY polyA_plus_RNA-seq    Data format 
     ENCFF126HSK_H3K9me3  ENCFF126HSK H3K9me3    Data format 
     ENCFF165OBA_polyA_plus_RNA-seq  ENCFF165OBA polyA_plus_RNA-seq    Data format 
     ENCFF173TZD_polyA_plus_RNA-seq  ENCFF173TZD polyA_plus_RNA-seq    Data format 
     ENCFF183IYH_polyA_plus_RNA-seq  ENCFF183IYH polyA_plus_RNA-seq    Data format 
     ENCFF191PQY_WGBS  ENCFF191PQY WGBS    Data format 
     ENCFF193JTL_polyA_plus_RNA-seq  ENCFF193JTL polyA_plus_RNA-seq    Data format 
     ENCFF198PPX_H3K4me3  ENCFF198PPX H3K4me3    Data format 
     ENCFF205EOY_polyA_plus_RNA-seq  ENCFF205EOY polyA_plus_RNA-seq    Data format 
     ENCFF205MNO_H3K9me3  ENCFF205MNO H3K9me3    Data format 
     ENCFF213SWB_H3K27ac  ENCFF213SWB H3K27ac    Data format 
     ENCFF219TNG_polyA_plus_RNA-seq  ENCFF219TNG polyA_plus_RNA-seq    Data format 
     ENCFF247PDX_polyA_plus_RNA-seq  ENCFF247PDX polyA_plus_RNA-seq    Data format 
     ENCFF255CRM_polyA_plus_RNA-seq  ENCFF255CRM polyA_plus_RNA-seq    Data format 
     ENCFF258EXC_H3K27me3  ENCFF258EXC H3K27me3    Data format 
     ENCFF267UXL_polyA_plus_RNA-seq  ENCFF267UXL polyA_plus_RNA-seq    Data format 
     ENCFF270SVI_polyA_plus_RNA-seq  ENCFF270SVI polyA_plus_RNA-seq    Data format 
     ENCFF281LJW_polyA_plus_RNA-seq  ENCFF281LJW polyA_plus_RNA-seq    Data format 
     ENCFF282SQK_polyA_plus_RNA-seq  ENCFF282SQK polyA_plus_RNA-seq    Data format 
     ENCFF286TPY_H3K9me3  ENCFF286TPY H3K9me3    Data format 
     ENCFF291ETE_H3K27ac  ENCFF291ETE H3K27ac    Data format 
     ENCFF297DIC_H3K9me3  ENCFF297DIC H3K9me3    Data format 
     ENCFF305GVS_polyA_plus_RNA-seq  ENCFF305GVS polyA_plus_RNA-seq    Data format 
     ENCFF323USW_H3K4me3  ENCFF323USW H3K4me3    Data format 
     ENCFF325HAB_polyA_plus_RNA-seq  ENCFF325HAB polyA_plus_RNA-seq    Data format 
     ENCFF336SJL_polyA_plus_RNA-seq  ENCFF336SJL polyA_plus_RNA-seq    Data format 
     ENCFF348XEN_polyA_plus_RNA-seq  ENCFF348XEN polyA_plus_RNA-seq    Data format 
     ENCFF365KUY_H3K9me3  ENCFF365KUY H3K9me3    Data format 
     ENCFF374AXQ_H3K27ac  ENCFF374AXQ H3K27ac    Data format 
     ENCFF405VDD_H3K27me3  ENCFF405VDD H3K27me3    Data format 
     ENCFF420QJU_H3K9me3  ENCFF420QJU H3K9me3    Data format 
     ENCFF440JSE_H3K4me1  ENCFF440JSE H3K4me1    Data format 
     ENCFF440YEW_H3K9me3  ENCFF440YEW H3K9me3    Data format 
     ENCFF454UVK_H3K27me3  ENCFF454UVK H3K27me3    Data format 
     ENCFF467ODV_polyA_plus_RNA-seq  ENCFF467ODV polyA_plus_RNA-seq    Data format 
     ENCFF482QOZ_H3K36me3  ENCFF482QOZ H3K36me3    Data format 
     ENCFF488FWM_polyA_plus_RNA-seq  ENCFF488FWM polyA_plus_RNA-seq    Data format 
     ENCFF500IMK_H3K4me3  ENCFF500IMK H3K4me3    Data format 
     ENCFF510VOD_polyA_plus_RNA-seq  ENCFF510VOD polyA_plus_RNA-seq    Data format 
     ENCFF515PDE_polyA_plus_RNA-seq  ENCFF515PDE polyA_plus_RNA-seq    Data format 
     ENCFF523MYX_polyA_plus_RNA-seq  ENCFF523MYX polyA_plus_RNA-seq    Data format 
     ENCFF547WHR_H3K36me3  ENCFF547WHR H3K36me3    Data format 
     ENCFF574FBU_H3K4me3  ENCFF574FBU H3K4me3    Data format 
     ENCFF582ZIP_polyA_plus_RNA-seq  ENCFF582ZIP polyA_plus_RNA-seq    Data format 
     ENCFF603CPY_H3K4me3  ENCFF603CPY H3K4me3    Data format 
     ENCFF603NBF_H3K9me3  ENCFF603NBF H3K9me3    Data format 
     ENCFF607NSG_H3K4me3  ENCFF607NSG H3K4me3    Data format 
     ENCFF627OHJ_H3K4me1  ENCFF627OHJ H3K4me1    Data format 
     ENCFF666YHM_polyA_plus_RNA-seq  ENCFF666YHM polyA_plus_RNA-seq    Data format 
     ENCFF668NAS_H3K4me3  ENCFF668NAS H3K4me3    Data format 
     ENCFF677XLZ_polyA_plus_RNA-seq  ENCFF677XLZ polyA_plus_RNA-seq    Data format 
     ENCFF683DHL_polyA_plus_RNA-seq  ENCFF683DHL polyA_plus_RNA-seq    Data format 
     ENCFF706UPZ_H3K27ac  ENCFF706UPZ H3K27ac    Data format 
     ENCFF710BDS_polyA_plus_RNA-seq  ENCFF710BDS polyA_plus_RNA-seq    Data format 
     ENCFF719KIV_H3K27me3  ENCFF719KIV H3K27me3    Data format 
     ENCFF723DZF_H3K27ac  ENCFF723DZF H3K27ac    Data format 
     ENCFF734DFY_H3K27ac  ENCFF734DFY H3K27ac    Data format 
     ENCFF734PLL_H3K4me3  ENCFF734PLL H3K4me3    Data format 
     ENCFF752DSZ_H3K27me3  ENCFF752DSZ H3K27me3    Data format 
     ENCFF767XDN_polyA_plus_RNA-seq  ENCFF767XDN polyA_plus_RNA-seq    Data format 
     ENCFF782IBE_polyA_plus_RNA-seq  ENCFF782IBE polyA_plus_RNA-seq    Data format 
     ENCFF782QJE_polyA_plus_RNA-seq  ENCFF782QJE polyA_plus_RNA-seq    Data format 
     ENCFF810RHZ_polyA_plus_RNA-seq  ENCFF810RHZ polyA_plus_RNA-seq    Data format 
     ENCFF810YRB_H3K27ac  ENCFF810YRB H3K27ac    Data format 
     ENCFF816JYY_H3K27me3  ENCFF816JYY H3K27me3    Data format 
     ENCFF827RFD_H3K27ac  ENCFF827RFD H3K27ac    Data format 
     ENCFF832WZA_H3K4me1  ENCFF832WZA H3K4me1    Data format 
     ENCFF848SHN_polyA_plus_RNA-seq  ENCFF848SHN polyA_plus_RNA-seq    Data format 
     ENCFF853GVH_polyA_plus_RNA-seq  ENCFF853GVH polyA_plus_RNA-seq    Data format 
     ENCFF860JIT_H3K9me3  ENCFF860JIT H3K9me3    Data format 
     ENCFF860UJL_H3K27me3  ENCFF860UJL H3K27me3    Data format 
     ENCFF866FIZ_polyA_plus_RNA-seq  ENCFF866FIZ polyA_plus_RNA-seq    Data format 
     ENCFF866RBR_polyA_plus_RNA-seq  ENCFF866RBR polyA_plus_RNA-seq    Data format 
     ENCFF904IOY_H3K4me1  ENCFF904IOY H3K4me1    Data format 
     ENCFF904WPE_H3K9me3  ENCFF904WPE H3K9me3    Data format 
     ENCFF915LOM_H3K27ac  ENCFF915LOM H3K27ac    Data format 
     ENCFF933ZMK_polyA_plus_RNA-seq  ENCFF933ZMK polyA_plus_RNA-seq    Data format 
     ENCFF948ZCT_H3K4me3  ENCFF948ZCT H3K4me3    Data format 
     ENCFF949GMS_H3K9me3  ENCFF949GMS H3K9me3    Data format 
     ENCFF953ACP_polyA_plus_RNA-seq  ENCFF953ACP polyA_plus_RNA-seq    Data format 
     ENCFF969EPK_polyA_plus_RNA-seq  ENCFF969EPK polyA_plus_RNA-seq    Data format 
     ENCFF973GXN_polyA_plus_RNA-seq  ENCFF973GXN polyA_plus_RNA-seq    Data format 
     ENCFF980ZDT_polyA_plus_RNA-seq  ENCFF980ZDT polyA_plus_RNA-seq    Data format 
     ENCFF984EWK_H3K9me3  ENCFF984EWK H3K9me3    Data format 
     ENCFF994HCY_H3K27ac  ENCFF994HCY H3K27ac    Data format 
     ENCFF999LAA_polyA_plus_RNA-seq  ENCFF999LAA polyA_plus_RNA-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:duodenal_mucosa
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF