Sample Summary heart_left_ventricle Summary Track Settings
 
Roadmap Epigenome heart_left_ventricle Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
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All subtracks:
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     ENCFF009OER_H3K4me1  ENCFF009OER H3K4me1    Data format 
     ENCFF010EEB_polyA_plus_RNA-seq  ENCFF010EEB polyA_plus_RNA-seq    Data format 
     ENCFF010EUT_H3K27ac  ENCFF010EUT H3K27ac    Data format 
     ENCFF033WRS_polyA_plus_RNA-seq  ENCFF033WRS polyA_plus_RNA-seq    Data format 
     ENCFF044UZY_polyA_plus_RNA-seq  ENCFF044UZY polyA_plus_RNA-seq    Data format 
     ENCFF072ENO_H3K27ac  ENCFF072ENO H3K27ac    Data format 
     ENCFF072WBQ_polyA_plus_RNA-seq  ENCFF072WBQ polyA_plus_RNA-seq    Data format 
     ENCFF077VAZ_H3K9me3  ENCFF077VAZ H3K9me3    Data format 
     ENCFF087FOI_H3K27me3  ENCFF087FOI H3K27me3    Data format 
     ENCFF087XIR_H3K9me3  ENCFF087XIR H3K9me3    Data format 
     ENCFF094USN_H3K4me3  ENCFF094USN H3K4me3    Data format 
     ENCFF112OTY_H3K9me3  ENCFF112OTY H3K9me3    Data format 
     ENCFF136KEU_H3K4me1  ENCFF136KEU H3K4me1    Data format 
     ENCFF142WOT_H3K27ac  ENCFF142WOT H3K27ac    Data format 
     ENCFF154UFP_H3K27me3  ENCFF154UFP H3K27me3    Data format 
     ENCFF178AVN_H3K9me3  ENCFF178AVN H3K9me3    Data format 
     ENCFF190UNW_H3K4me3  ENCFF190UNW H3K4me3    Data format 
     ENCFF202DON_H3K4me1  ENCFF202DON H3K4me1    Data format 
     ENCFF205MJV_polyA_plus_RNA-seq  ENCFF205MJV polyA_plus_RNA-seq    Data format 
     ENCFF217VGN_polyA_plus_RNA-seq  ENCFF217VGN polyA_plus_RNA-seq    Data format 
     ENCFF234AHA_H3K36me3  ENCFF234AHA H3K36me3    Data format 
     ENCFF259CAK_H3K4me3  ENCFF259CAK H3K4me3    Data format 
     ENCFF307QSV_WGBS  ENCFF307QSV WGBS    Data format 
     ENCFF326LWU_H3K27ac  ENCFF326LWU H3K27ac    Data format 
     ENCFF329ROI_H3K4me1  ENCFF329ROI H3K4me1    Data format 
     ENCFF341OYD_H3K27me3  ENCFF341OYD H3K27me3    Data format 
     ENCFF390OMP_H3K36me3  ENCFF390OMP H3K36me3    Data format 
     ENCFF395BUI_H3K27ac  ENCFF395BUI H3K27ac    Data format 
     ENCFF407FDV_H3K4me3  ENCFF407FDV H3K4me3    Data format 
     ENCFF411KAK_H3K9me3  ENCFF411KAK H3K9me3    Data format 
     ENCFF422CBS_H3K36me3  ENCFF422CBS H3K36me3    Data format 
     ENCFF430ZYJ_H3K27ac  ENCFF430ZYJ H3K27ac    Data format 
     ENCFF449QES_H3K27me3  ENCFF449QES H3K27me3    Data format 
     ENCFF461IFU_polyA_plus_RNA-seq  ENCFF461IFU polyA_plus_RNA-seq    Data format 
     ENCFF463SDP_H3K4me1  ENCFF463SDP H3K4me1    Data format 
     ENCFF474OKP_H3K4me1  ENCFF474OKP H3K4me1    Data format 
     ENCFF476LGB_H3K36me3  ENCFF476LGB H3K36me3    Data format 
     ENCFF499CXG_H3K27ac  ENCFF499CXG H3K27ac    Data format 
     ENCFF509KOK_polyA_plus_RNA-seq  ENCFF509KOK polyA_plus_RNA-seq    Data format 
     ENCFF530SJR_H3K4me1  ENCFF530SJR H3K4me1    Data format 
     ENCFF574HAD_polyA_plus_RNA-seq  ENCFF574HAD polyA_plus_RNA-seq    Data format 
     ENCFF575VWS_H3K36me3  ENCFF575VWS H3K36me3    Data format 
     ENCFF589MOZ_polyA_plus_RNA-seq  ENCFF589MOZ polyA_plus_RNA-seq    Data format 
     ENCFF612IZT_H3K4me3  ENCFF612IZT H3K4me3    Data format 
     ENCFF618TKH_H3K4me3  ENCFF618TKH H3K4me3    Data format 
     ENCFF630HIW_H3K27ac  ENCFF630HIW H3K27ac    Data format 
     ENCFF639MOT_H3K27me3  ENCFF639MOT H3K27me3    Data format 
     ENCFF646MUQ_polyA_plus_RNA-seq  ENCFF646MUQ polyA_plus_RNA-seq    Data format 
     ENCFF655BKU_polyA_plus_RNA-seq  ENCFF655BKU polyA_plus_RNA-seq    Data format 
     ENCFF699JBF_H3K36me3  ENCFF699JBF H3K36me3    Data format 
     ENCFF784ZXN_H3K27me3  ENCFF784ZXN H3K27me3    Data format 
     ENCFF816CTI_H3K9me3  ENCFF816CTI H3K9me3    Data format 
     ENCFF816YQV_H3K36me3  ENCFF816YQV H3K36me3    Data format 
     ENCFF817RTJ_H3K4me3  ENCFF817RTJ H3K4me3    Data format 
     ENCFF819XQR_polyA_plus_RNA-seq  ENCFF819XQR polyA_plus_RNA-seq    Data format 
     ENCFF831ISM_H3K9me3  ENCFF831ISM H3K9me3    Data format 
     ENCFF844EMU_polyA_plus_RNA-seq  ENCFF844EMU polyA_plus_RNA-seq    Data format 
     ENCFF851XAJ_polyA_plus_RNA-seq  ENCFF851XAJ polyA_plus_RNA-seq    Data format 
     ENCFF895NKH_H3K36me3  ENCFF895NKH H3K36me3    Data format 
     ENCFF923BPR_polyA_plus_RNA-seq  ENCFF923BPR polyA_plus_RNA-seq    Data format 
     ENCFF928JXF_H3K4me1  ENCFF928JXF H3K4me1    Data format 
     ENCFF928TGF_H3K27me3  ENCFF928TGF H3K27me3    Data format 
     ENCFF930UVO_H3K27me3  ENCFF930UVO H3K27me3    Data format 
     ENCFF966NNR_H3K4me3  ENCFF966NNR H3K4me3    Data format 
     ENCFF988JKE_H3K9me3  ENCFF988JKE H3K9me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:CpG_sites_coverage
Sample:heart
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF