Sample Summary mammary_epithelial_cell Summary Track Settings
 
Roadmap Epigenome mammary_epithelial_cell Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
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     ENCFF022VFZ_H3K36me3  ENCFF022VFZ H3K36me3    Data format 
     ENCFF024XDW_H3K4me1  ENCFF024XDW H3K4me1    Data format 
     ENCFF034IGO_microRNA-seq  ENCFF034IGO microRNA-seq    Data format 
     ENCFF038QMI_H3K4me1  ENCFF038QMI H3K4me1    Data format 
     ENCFF098UPD_polyA_plus_RNA-seq  ENCFF098UPD polyA_plus_RNA-seq    Data format 
     ENCFF116TSQ_H3K4me3  ENCFF116TSQ H3K4me3    Data format 
     ENCFF121GTV_H3K27me3  ENCFF121GTV H3K27me3    Data format 
     ENCFF129DOW_microRNA-seq  ENCFF129DOW microRNA-seq    Data format 
     ENCFF137GTU_microRNA-seq  ENCFF137GTU microRNA-seq    Data format 
     ENCFF174GWU_microRNA-seq  ENCFF174GWU microRNA-seq    Data format 
     ENCFF187PIL_H3K9me3  ENCFF187PIL H3K9me3    Data format 
     ENCFF227VUS_DNase-seq  ENCFF227VUS DNase-seq    Data format 
     ENCFF251BVR_DNase-seq  ENCFF251BVR DNase-seq    Data format 
     ENCFF290LZT_H3K27me3  ENCFF290LZT H3K27me3    Data format 
     ENCFF304FDV_microRNA-seq  ENCFF304FDV microRNA-seq    Data format 
     ENCFF308DDE_polyA_plus_RNA-seq  ENCFF308DDE polyA_plus_RNA-seq    Data format 
     ENCFF349RKV_microRNA-seq  ENCFF349RKV microRNA-seq    Data format 
     ENCFF500EXB_H3K4me3  ENCFF500EXB H3K4me3    Data format 
     ENCFF526WUE_H3K4me3  ENCFF526WUE H3K4me3    Data format 
     ENCFF566NBI_polyA_plus_RNA-seq  ENCFF566NBI polyA_plus_RNA-seq    Data format 
     ENCFF653IYA_H3K9me3  ENCFF653IYA H3K9me3    Data format 
     ENCFF660RWC_H3K36me3  ENCFF660RWC H3K36me3    Data format 
     ENCFF755EWS_H3K4me1  ENCFF755EWS H3K4me1    Data format 
     ENCFF796VHT_H3K36me3  ENCFF796VHT H3K36me3    Data format 
     ENCFF820FLV_H3K27me3  ENCFF820FLV H3K27me3    Data format 
     ENCFF847BOU_H3K9me3  ENCFF847BOU H3K9me3    Data format 
     ENCFF861HEY_H3K27me3  ENCFF861HEY H3K27me3    Data format 
     ENCFF887KJE_H3K36me3  ENCFF887KJE H3K36me3    Data format 
     ENCFF920UUG_H3K4me1  ENCFF920UUG H3K4me1    Data format 
     ENCFF930NWJ_H3K9me3  ENCFF930NWJ H3K9me3    Data format 
     ENCFF932HDG_H3K4me3  ENCFF932HDG H3K4me3    Data format 
     ENCFF934KKZ_microRNA-seq  ENCFF934KKZ microRNA-seq    Data format 
     ENCFF989BOE_microRNA-seq  ENCFF989BOE microRNA-seq    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:lung
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF