Sample Summary mucosa_of_rectum Summary Track Settings
 
Roadmap Epigenome mucosa_of_rectum Summary

Track collection: Sample Summary

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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
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Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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     ENCFF013FBJ_H3K27me3  ENCFF013FBJ H3K27me3    Data format 
     ENCFF081OON_H3K9me3  ENCFF081OON H3K9me3    Data format 
     ENCFF081RKJ_H3K27ac  ENCFF081RKJ H3K27ac    Data format 
     ENCFF120TOC_H3K4me3  ENCFF120TOC H3K4me3    Data format 
     ENCFF235HPB_H3K36me3  ENCFF235HPB H3K36me3    Data format 
     ENCFF243OOK_H3K36me3  ENCFF243OOK H3K36me3    Data format 
     ENCFF252IGE_H3K27me3  ENCFF252IGE H3K27me3    Data format 
     ENCFF271CGT_H3K4me3  ENCFF271CGT H3K4me3    Data format 
     ENCFF284MFS_H3K27me3  ENCFF284MFS H3K27me3    Data format 
     ENCFF297SWX_H3K27me3  ENCFF297SWX H3K27me3    Data format 
     ENCFF309YBQ_H3K9ac  ENCFF309YBQ H3K9ac    Data format 
     ENCFF334XST_H3K4me3  ENCFF334XST H3K4me3    Data format 
     ENCFF370MEL_H3K4me3  ENCFF370MEL H3K4me3    Data format 
     ENCFF379SXL_H3K27ac  ENCFF379SXL H3K27ac    Data format 
     ENCFF382VGW_H3K4me1  ENCFF382VGW H3K4me1    Data format 
     ENCFF444KCK_H3K9me3  ENCFF444KCK H3K9me3    Data format 
     ENCFF448DIU_H3K36me3  ENCFF448DIU H3K36me3    Data format 
     ENCFF525TII_H3K4me1  ENCFF525TII H3K4me1    Data format 
     ENCFF526LAW_H3K9ac  ENCFF526LAW H3K9ac    Data format 
     ENCFF530IRV_H3K36me3  ENCFF530IRV H3K36me3    Data format 
     ENCFF565UAO_H3K9ac  ENCFF565UAO H3K9ac    Data format 
     ENCFF570JAO_H3K27ac  ENCFF570JAO H3K27ac    Data format 
     ENCFF600BIB_H3K36me3  ENCFF600BIB H3K36me3    Data format 
     ENCFF607AUL_H3K9me3  ENCFF607AUL H3K9me3    Data format 
     ENCFF616HTG_H3K9me3  ENCFF616HTG H3K9me3    Data format 
     ENCFF620PCH_H3K9me3  ENCFF620PCH H3K9me3    Data format 
     ENCFF647BNU_H3K27ac  ENCFF647BNU H3K27ac    Data format 
     ENCFF654UPJ_H3K27me3  ENCFF654UPJ H3K27me3    Data format 
     ENCFF662MKI_H3K27me3  ENCFF662MKI H3K27me3    Data format 
     ENCFF662NRR_H3K9me3  ENCFF662NRR H3K9me3    Data format 
     ENCFF669SXH_H3K9me3  ENCFF669SXH H3K9me3    Data format 
     ENCFF673DEB_H3K4me3  ENCFF673DEB H3K4me3    Data format 
     ENCFF682PFU_H3K4me3  ENCFF682PFU H3K4me3    Data format 
     ENCFF688IVJ_H3K4me3  ENCFF688IVJ H3K4me3    Data format 
     ENCFF691JQK_H3K27me3  ENCFF691JQK H3K27me3    Data format 
     ENCFF692SEF_H3K4me1  ENCFF692SEF H3K4me1    Data format 
     ENCFF696UYH_H3K27ac  ENCFF696UYH H3K27ac    Data format 
     ENCFF705FGY_H3K27ac  ENCFF705FGY H3K27ac    Data format 
     ENCFF713OZE_H3K36me3  ENCFF713OZE H3K36me3    Data format 
     ENCFF722YAS_H3K9ac  ENCFF722YAS H3K9ac    Data format 
     ENCFF724WKK_H3K4me3  ENCFF724WKK H3K4me3    Data format 
     ENCFF736MKD_H3K4me1  ENCFF736MKD H3K4me1    Data format 
     ENCFF754ESQ_H3K9ac  ENCFF754ESQ H3K9ac    Data format 
     ENCFF788UFK_H3K36me3  ENCFF788UFK H3K36me3    Data format 
     ENCFF814AAQ_H3K27ac  ENCFF814AAQ H3K27ac    Data format 
     ENCFF850MYM_H3K27me3  ENCFF850MYM H3K27me3    Data format 
     ENCFF904CBR_H3K4me1  ENCFF904CBR H3K4me1    Data format 
     ENCFF907XXC_H3K27ac  ENCFF907XXC H3K27ac    Data format 
     ENCFF909OMI_H3K4me1  ENCFF909OMI H3K4me1    Data format 
     ENCFF924JFQ_H3K9ac  ENCFF924JFQ H3K9ac    Data format 
     ENCFF939PLA_H3K4me1  ENCFF939PLA H3K4me1    Data format 
     ENCFF946JVM_H3K36me3  ENCFF946JVM H3K36me3    Data format 
     ENCFF970KBT_H3K9me3  ENCFF970KBT H3K9me3    Data format 
     ENCFF972YUU_H3K4me1  ENCFF972YUU H3K4me1    Data format 
     ENCFF975JLT_H3K9ac  ENCFF975JLT H3K9ac    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:middle_frontal_area_46
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF