Sample Summary natural_killer_cell Summary Track Settings
 
Roadmap Epigenome natural_killer_cell Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
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     ENCFF011WOY_H3K27ac  ENCFF011WOY H3K27ac    Data format 
     ENCFF025UPE_H3K36me3  ENCFF025UPE H3K36me3    Data format 
     ENCFF076XUR_H3K4me1  ENCFF076XUR H3K4me1    Data format 
     ENCFF077KMI_H3K4me3  ENCFF077KMI H3K4me3    Data format 
     ENCFF090IQV_H3K9me3  ENCFF090IQV H3K9me3    Data format 
     ENCFF090LWO_polyA_plus_RNA-seq  ENCFF090LWO polyA_plus_RNA-seq    Data format 
     ENCFF104JJN_DNase-seq  ENCFF104JJN DNase-seq    Data format 
     ENCFF114PBW_DNase-seq  ENCFF114PBW DNase-seq    Data format 
     ENCFF125SYT_DNase-seq  ENCFF125SYT DNase-seq    Data format 
     ENCFF144OXR_H3K9me3  ENCFF144OXR H3K9me3    Data format 
     ENCFF145AAM_H3K9me3  ENCFF145AAM H3K9me3    Data format 
     ENCFF228HDN_DNase-seq  ENCFF228HDN DNase-seq    Data format 
     ENCFF235NFH_polyA_plus_RNA-seq  ENCFF235NFH polyA_plus_RNA-seq    Data format 
     ENCFF293ETP_H3K27ac  ENCFF293ETP H3K27ac    Data format 
     ENCFF312MFG_H3K36me3  ENCFF312MFG H3K36me3    Data format 
     ENCFF326NYL_H3K4me3  ENCFF326NYL H3K4me3    Data format 
     ENCFF330EXF_H3K9me3  ENCFF330EXF H3K9me3    Data format 
     ENCFF399CMG_H3K27ac  ENCFF399CMG H3K27ac    Data format 
     ENCFF410ISM_polyA_plus_RNA-seq  ENCFF410ISM polyA_plus_RNA-seq    Data format 
     ENCFF442JAX_H3K4me3  ENCFF442JAX H3K4me3    Data format 
     ENCFF448GRO_H3K36me3  ENCFF448GRO H3K36me3    Data format 
     ENCFF463QOD_DNase-seq  ENCFF463QOD DNase-seq    Data format 
     ENCFF467XBM_H3K27me3  ENCFF467XBM H3K27me3    Data format 
     ENCFF533KEV_H3K4me1  ENCFF533KEV H3K4me1    Data format 
     ENCFF536TBW_H3K4me1  ENCFF536TBW H3K4me1    Data format 
     ENCFF569IPX_H3K27me3  ENCFF569IPX H3K27me3    Data format 
     ENCFF608XPJ_H3K27ac  ENCFF608XPJ H3K27ac    Data format 
     ENCFF645QDT_polyA_plus_RNA-seq  ENCFF645QDT polyA_plus_RNA-seq    Data format 
     ENCFF647IBZ_H3K4me1  ENCFF647IBZ H3K4me1    Data format 
     ENCFF683TIO_H3K27me3  ENCFF683TIO H3K27me3    Data format 
     ENCFF794DWS_H3K36me3  ENCFF794DWS H3K36me3    Data format 
     ENCFF936TIC_H3K27me3  ENCFF936TIC H3K27me3    Data format 
     ENCFF977TEF_H3K4me3  ENCFF977TEF H3K4me3    Data format 
     ENCFF985WGD_DNase-seq  ENCFF985WGD DNase-seq    Data format 
    
Metadata:
Assay:microRNA-seq
OutputType:plus_strand_signal_of_all_reads
Sample:naive_thymus-derived_CD4-positive,_alpha-beta_T_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF