Sample Summary placental_basal_plate Summary Track Settings
 
Roadmap Epigenome placental_basal_plate Summary

Track collection: Sample Summary

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     ENCFF009LUG_polyA_plus_RNA-seq  ENCFF009LUG polyA_plus_RNA-seq    Data format 
     ENCFF025OFB_H3K9me3  ENCFF025OFB H3K9me3    Data format 
     ENCFF054YDP_H3K36me3  ENCFF054YDP H3K36me3    Data format 
     ENCFF069QQH_polyA_plus_RNA-seq  ENCFF069QQH polyA_plus_RNA-seq    Data format 
     ENCFF072GBE_H3K27ac  ENCFF072GBE H3K27ac    Data format 
     ENCFF087SPC_H3K27me3  ENCFF087SPC H3K27me3    Data format 
     ENCFF121KNO_polyA_plus_RNA-seq  ENCFF121KNO polyA_plus_RNA-seq    Data format 
     ENCFF137PGF_H3K4me3  ENCFF137PGF H3K4me3    Data format 
     ENCFF141DXG_polyA_plus_RNA-seq  ENCFF141DXG polyA_plus_RNA-seq    Data format 
     ENCFF159QQD_polyA_plus_RNA-seq  ENCFF159QQD polyA_plus_RNA-seq    Data format 
     ENCFF174HPH_H3K4me3  ENCFF174HPH H3K4me3    Data format 
     ENCFF205WWB_H3K36me3  ENCFF205WWB H3K36me3    Data format 
     ENCFF242POX_microRNA-seq  ENCFF242POX microRNA-seq    Data format 
     ENCFF253EYX_polyA_plus_RNA-seq  ENCFF253EYX polyA_plus_RNA-seq    Data format 
     ENCFF281SMW_H3K4me1  ENCFF281SMW H3K4me1    Data format 
     ENCFF299LUC_H3K4me1  ENCFF299LUC H3K4me1    Data format 
     ENCFF330ADE_polyA_plus_RNA-seq  ENCFF330ADE polyA_plus_RNA-seq    Data format 
     ENCFF330KSM_H3K27ac  ENCFF330KSM H3K27ac    Data format 
     ENCFF346JRR_H3K27me3  ENCFF346JRR H3K27me3    Data format 
     ENCFF354EVQ_H3K4me3  ENCFF354EVQ H3K4me3    Data format 
     ENCFF368GND_H3K36me3  ENCFF368GND H3K36me3    Data format 
     ENCFF369YYL_H3K9me3  ENCFF369YYL H3K9me3    Data format 
     ENCFF385PMK_H3K4me3  ENCFF385PMK H3K4me3    Data format 
     ENCFF418TWM_H3K36me3  ENCFF418TWM H3K36me3    Data format 
     ENCFF432FMG_polyA_plus_RNA-seq  ENCFF432FMG polyA_plus_RNA-seq    Data format 
     ENCFF433XGE_H3K4me3  ENCFF433XGE H3K4me3    Data format 
     ENCFF435EWL_polyA_plus_RNA-seq  ENCFF435EWL polyA_plus_RNA-seq    Data format 
     ENCFF462QER_H3K27ac  ENCFF462QER H3K27ac    Data format 
     ENCFF477MQP_H3K27me3  ENCFF477MQP H3K27me3    Data format 
     ENCFF479WWD_H3K27me3  ENCFF479WWD H3K27me3    Data format 
     ENCFF486AGF_H3K36me3  ENCFF486AGF H3K36me3    Data format 
     ENCFF486WKK_polyA_plus_RNA-seq  ENCFF486WKK polyA_plus_RNA-seq    Data format 
     ENCFF513BHI_polyA_plus_RNA-seq  ENCFF513BHI polyA_plus_RNA-seq    Data format 
     ENCFF513JTW_polyA_plus_RNA-seq  ENCFF513JTW polyA_plus_RNA-seq    Data format 
     ENCFF536GEG_H3K27ac  ENCFF536GEG H3K27ac    Data format 
     ENCFF553QGM_polyA_plus_RNA-seq  ENCFF553QGM polyA_plus_RNA-seq    Data format 
     ENCFF558ABQ_microRNA-seq  ENCFF558ABQ microRNA-seq    Data format 
     ENCFF626DKO_H3K27ac  ENCFF626DKO H3K27ac    Data format 
     ENCFF648CVA_H3K4me1  ENCFF648CVA H3K4me1    Data format 
     ENCFF657OCV_H3K36me3  ENCFF657OCV H3K36me3    Data format 
     ENCFF675IJQ_polyA_plus_RNA-seq  ENCFF675IJQ polyA_plus_RNA-seq    Data format 
     ENCFF680HII_H3K27ac  ENCFF680HII H3K27ac    Data format 
     ENCFF686SLK_microRNA-seq  ENCFF686SLK microRNA-seq    Data format 
     ENCFF760PBX_polyA_plus_RNA-seq  ENCFF760PBX polyA_plus_RNA-seq    Data format 
     ENCFF793TVY_H3K4me3  ENCFF793TVY H3K4me3    Data format 
     ENCFF803WBW_H3K9me3  ENCFF803WBW H3K9me3    Data format 
     ENCFF804GLE_H3K4me3  ENCFF804GLE H3K4me3    Data format 
     ENCFF824NWX_H3K27ac  ENCFF824NWX H3K27ac    Data format 
     ENCFF825GHS_H3K9me3  ENCFF825GHS H3K9me3    Data format 
     ENCFF837UAW_H3K4me3  ENCFF837UAW H3K4me3    Data format 
     ENCFF852MOU_H3K4me1  ENCFF852MOU H3K4me1    Data format 
     ENCFF870MXG_H3K36me3  ENCFF870MXG H3K36me3    Data format 
     ENCFF918JSW_H3K27ac  ENCFF918JSW H3K27ac    Data format 
     ENCFF920TSY_microRNA-seq  ENCFF920TSY microRNA-seq    Data format 
     ENCFF978ZVY_H3K36me3  ENCFF978ZVY H3K36me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:placenta
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF