ChIP-seq H3K27ac Track Settings

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Roadmap H3K27ac

Track collection: Roadmap ChIP-seq

Description

All tracks in this collection (31)

Maximum display mode: Reset to defaults

Select subtracks by output type and sample type:

All	*Output Type*	peaks	pseudoreplicated peaks	replicated peaks	signal p-value	fold change over control
*Sample Type*
placental basal plate
peripheral blood mononuclear cell
chorionic villus
UCSF-4
chorion
trophoblast
placenta
layer of hippocampus
caudate nucleus
HUES64
adrenal gland
thymus
CD4-positive, alpha-beta T cell
B cell
muscle of leg
amnion
CD14-positive monocyte
trophoblast cell
muscle of trunk
middle frontal area 46
muscle layer of duodenum
kidney
neuronal stem cell
esophagus
aorta
T-cell
temporal lobe
endocrine pancreas
duodenal mucosa
stomach
colonic mucosa
rectal smooth muscle tissue
IMR-90
large intestine
mesendoderm
subcutaneous abdominal adipose tissue
fibroblast of breast
common myeloid progenitor, CD34-positive
cingulate gyrus
urinary bladder
substantia nigra
iPS-18a
HUES48
angular gyrus
skeletal muscle tissue
liver
CD4-positive, CD25-positive, alpha-beta regulatory T cell
HUES6
small intestine
spinal cord
right cardiac atrium
pancreas
foreskin fibroblast
CD8-positive, alpha-beta T cell
CD4-positive, alpha-beta memory T cell
mucosa of rectum
foreskin melanocyte
ectodermal cell
CD8-positive, alpha-beta memory T cell
effector memory CD4-positive, alpha-beta T cell
iPS-20b
H9
lung
natural killer cell
mesodermal cell
heart left ventricle
spleen
naive thymus-derived CD4-positive, alpha-beta T cell
ovary
psoas muscle
mesenchymal stem cell
sigmoid colon
iPS DF 19.11
H1
heart right ventricle
adipose tissue
iPS DF 6.9
foreskin keratinocyte
neurosphere
stomach smooth muscle
muscle layer of colon
endodermal cell
*Sample Type*
All	*Output Type*	peaks	pseudoreplicated peaks	replicated peaks	signal p-value	fold change over control

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Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays histone modification maps generated using ChIP-Seq for the Roadmap project. Experiments include various histone marks over a number of normal sample types. Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols: follow this link for experimental protocols.

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren Lab, UCSD

Bradley E. Berstein lab, Broad Institute

John Stamatoyannopoulos Lab, University of Washington

Joseph Costello Lab, UCSF