Affy GNF1M Track Settings

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Alignments of Probes from Affymetrix GNF1M Chip (All Expression and Regulation tracks)

Display mode: Duplicate track

Alignment Gap/Insertion Display Options Help on display options
	Draw double horizontal lines when both genome and query have an insertion
	Draw a vertical purple line for an insertion at the beginning or end of the query, orange for insertion in the middle of the query

Display data as a density graph:

Display data as a rearrangement graph:

Data schema/format description and download

Assembly: Mouse July 2007 (NCBI37/mm9)
Data last updated at UCSC: 2007-09-10

Description

This track shows the location of the sequences used for the selection of probes on the Affymetrix GNF1M chips. The annotation contains 31,000 non-overlapping mouse genes and gene predictions.

Methods

The sequences were mapped to the genome with blat followed by pslReps using the parameters -minCover=0.3, -minAli=0.95 and -nearTop=0.005.

Credits

Thanks to the Genomics Institute of the Novartis Research Foundation (GNF) for the data underlying this track.