Affy U74 Track Settings

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Alignments of Affymetrix Consensus Sequences from MG-U74 v2 (A,B, and C) (All Expression and Regulation tracks)

Display mode: Duplicate track

Alignment Gap/Insertion Display Options Help on display options
	Draw double horizontal lines when both genome and query have an insertion
	Draw a vertical purple line for an insertion at the beginning or end of the query, orange for insertion in the middle of the query

Display data as a density graph:

Display data as a rearrangement graph:

Data schema/format description and download

Assembly: Mouse July 2007 (NCBI37/mm9)
Data last updated at UCSC: 2007-09-10

Description

This track shows the location of the consensus sequences used for the selection of probes on the Affymetrix MG-U74v2 set (A,B and C) of chips.

Methods

Consensus sequences were downloaded from the Affymetrix Product Support and mapped to the genome with blat followed by pslReps using the parameters -minCover=0.3, -minAli=0.95 and -nearTop=0.005.

Credits

Thanks to Affymetrix for the data underlying this track.