Affy Archive Affy U95 Track Settings
 
Alignments of Affymetrix Consensus/Exemplars from HG-U95

Track collection: Affymetrix Archive

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Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query


Display data as a density graph:

Display data as a rearrangement graph:
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)
Data last updated at UCSC: 2015-01-09

Description

This track shows the location of the consensus and exemplar sequences used for the selection of probes on the Affymetrix HG-U95Av2 chip. For this chip, probes are predominantly designed from consensus sequences.

Methods

Consensus and exemplar sequences were downloaded from the Affymetrix Product Support and mapped to the genome using blat followed by pslReps with the parameters: 

   -minCover=0.3 -minAli=0.95 -nearTop=0.005

Credits

Thanks to Affymetrix for the data underlying this track.