Description

This track shows a multiple alignment of 447 mammalian genomes made with Cactus and constraint scores derived from it. To build this track, the Zoonomia 241 alignment was used as a starting point, all primates and a few outdated assemblies were removed and an alignment between 233 newly sequenced primates was added. See the Methods section below for details, and also the publications by Kuderna et al. 2023 in the Reference section. All alignments and operations on them were performed using the Cactus toolkit.

Data Access

Downloads for data in this track are available from the directory:

• Cactus 447-way alignments (MAF format), and phylogenetic trees PhyloP conservation (WIG format)

Display Conventions and Configuration

In full and pack display modes, conservation scores are displayed as a wiggle track (histogram) in which the height reflects the size of the score. The conservation wiggles can be configured in a variety of ways to highlight different aspects of the displayed information. Click the Graph configuration help link for an explanation of the configuration options.

Pairwise alignments of each species to the human genome are displayed below the conservation histogram as a grayscale density plot (in pack mode) or as a wiggle (in full mode) that indicates alignment quality. In dense display mode, conservation is shown in grayscale using darker values to indicate higher levels of overall conservation as scored by phastCons.

Checkboxes on the track configuration page allow selection of the species to include in the pairwise display. Note that excluding species from the pairwise display does not alter the the conservation score display.

To view detailed information about the alignments at a specific position, zoom the display in to 30,000 or fewer bases, then click on the alignment.

Gap Annotation

The Display chains between alignments configuration option enables display of gaps between alignment blocks in the pairwise alignments in a manner similar to the Chain track display. Missing sequence in any assembly is highlighted in the track display by regions of yellow when zoomed out and by Ns when displayed at base level. The following conventions are used:

• Single line: No bases in the aligned species. Possibly due to a lineage-specific insertion between the aligned blocks in the human genome or a lineage-specific deletion between the aligned blocks in the aligning species.
• Double line: Aligning species has one or more unalignable bases in the gap region. Possibly due to excessive evolutionary distance between species or independent indels in the region between the aligned blocks in both species.
• Pale yellow coloring: Aligning species has Ns in the gap region. Reflects uncertainty in the relationship between the DNA of both species, due to lack of sequence in relevant portions of the aligning species.

Genomic Breaks

Discontinuities in the genomic context (chromosome, scaffold or region) of the aligned DNA in the aligning species are shown as follows:

• Vertical blue bar: Represents a discontinuity that persists indefinitely on either side, e.g. a large region of DNA on either side of the bar comes from a different chromosome in the aligned species due to a large scale rearrangement.
• Green square brackets: Enclose shorter alignments consisting of DNA from one genomic context in the aligned species nested inside a larger chain of alignments from a different genomic context. The alignment within the brackets may represent a short misalignment, a lineage-specific insertion of a transposon in the human genome that aligns to a paralogous copy somewhere else in the aligned species, or other similar occurrence.

Base Level

When zoomed-in to the base-level display, the track shows the base composition of each alignment. The numbers and symbols on the Gaps line indicate the lengths of gaps in the human sequence at those alignment positions relative to the longest non-human sequence. If there is sufficient space in the display, the size of the gap is shown. If the space is insufficient and the gap size is a multiple of 3, a "*" is displayed; other gap sizes are indicated by "+".

Codon translation is available in base-level display mode if the displayed region is identified as a coding segment. To display this annotation, select the species for translation from the pull-down menu in the Codon Translation configuration section at the top of the page. Then, select one of the following modes:

• No codon translation: The gene annotation is not used; the bases are displayed without translation.
• Use default species reading frames for translation: The annotations from the genome displayed in the Default species to establish reading frame pull-down menu are used to translate all the aligned species present in the alignment.
• Use reading frames for species if available, otherwise no translation: Codon translation is performed only for those species where the region is annotated as protein coding.
• Use reading frames for species if available, otherwise use default species: Codon translation is done on those species that are annotated as being protein coding over the aligned region using species-specific annotation; the remaining species are translated using the default species annotation.

Codon translation uses the following gene tracks as the basis for translation:

Gene Track	Species
RefSeq Genes	Bos mutus, Canis lupus familiaris, Carlito syrichta, Cercocebus atys, Chinchilla lanigera, Colobus angolensis, Condylura cristata, Dipodomys ordii, Elephantulus edwardii, Eptesicus fuscus, Felis catus, Felis catus fca126, Fukomys damarensis, Homo sapiesn, Ictidomys tridecemlineatus, Macaca mulatta, Macaca nemestrina, Marmota marmota, Microtus ochrogaster, Miniopterus natalensis, Mus musculus, Mus pahari, Myotis brandtii, Myotis davidii, Myotis lucifugus, Odobenus rosmarus, Orcinus orca, Otolemur garnettii, Peromyscus maniculatus, Piliocolobus tephrosceles, Propithecus coquerelli, Pteropus alecto, Pteropus vampyrus, Rattus norvegicus, Rhinopithecus roxellana, Saimiri boliviensis, Sorex araneus, Sus scrofa, Theropithecus gelada, Tupaia chinensis
Ensembl Genes	Cavia aperea
Augustus Genes	Eidolon helvum, Pteronotus parnellii
no annotation	Acinonyx jubatus, Acomys cahirinus, Ailuropoda melanoleuca, Ailurus fulgens, Allactaga bullata, Allenopithecus nigroviridis, Allochrocebus lhoesti, Allochrocebus preussi, Allochrocebus solatus, Alouatta belzebul, Alouatta caraya, Alouatta discolor, Alouatta juara, Alouatta macconnelli, Alouatta nigerrima, Alouatta palliata, Alouatta puruensis, Alouatta seniculus, Ammotragus lervia, Anoura caudifer, Antilocapra americana, Aotus azarae, Aotus griseimembra, Aotus nancymaae, Aotus trivirgatus, Aotus vociferans, Aplodontia rufa, Arctocebus calabarensis, Artibeus jamaicensis, Ateles geoffroyi_a, Ateles geoffroyi_b, Ateles belzebuth, Ateles chamek, Ateles marginatus, Ateles paniscus, Avahi laniger, Avahi peyrierasi, Balaenoptera acutorostrata, Balaenoptera bonaerensis, Beatragus hunteri, Bison bison, Bos indicus, Bos taurus, Bubalus bubalis, Cacajao ayresi, Cacajao calvus, Cacajao hosomi, Cacajao melanocephalus, Callibella humilis, Callimico goeldii, Callithrix geoffroyi, Callithrix jacchus, Callithrix kuhlii, Camelus bactrianus, Camelus dromedarius, Camelus ferus, Canis lupus VD, Canis lupus dingo, Canis lupus orion, Capra aegagrus, Capra hircus, Capromys pilorides, Carollia perspicillata, Castor canadensis, Catagonus wagneri, Cavia porcellus, Cavia tschudii, Cebuella niveiventris, Cebuella pygmaea, Cebus albifrons, Cebus olivaceus, Cebus unicolor, Cephalopachus bancanus, Ceratotherium simum, Ceratotherium simum cottoni, Cercocebus chrysogaster, Cercocebus lunulatus, Cercocebus torquatus, Cercopithecus ascanius, Cercopithecus cephus, Cercopithecus diana, Cercopithecus hamlyni, Cercopithecus lowei, Cercopithecus albogularis, Cercopithecus mona, Cercopithecus neglectus, Cercopithecus nictitans, Cercopithecus petaurista, Cercopithecus pogonias, Cercopithecus roloway, Chaetophractus vellerosus, Cheirogaleus major, Cheirogaleus medius, Cheracebus lucifer, Cheracebus lugens, Cheracebus regulus, Cheracebus torquatus, Chiropotes albinasus, Chiropotes israelita, Chiropotes sagulatus, Chlorocebus aethiops, Chlorocebus pygerythrus, Chlorocebus sabaeus, Choloepus didactylus, Choloepus hoffmanni, Chrysochloris asiatica, Colobus guereza, Colobus polykomos, Craseonycteris thonglongyai, Cricetomys gambianus, Cricetulus griseus, Crocidura indochinensis, Cryptoprocta ferox, Ctenodactylus gundi, Ctenomys sociabilis, Cuniculus paca, Dasyprocta punctata, Dasypus novemcinctus, Daubentonia madagascariensis, Delphinapterus leucas, Desmodus rotundus, Dicerorhinus sumatrensis, Diceros bicornis, Dinomys branickii, Dipodomys stephensi, Dolichotis patagonum, Echinops telfairi, Elaphurus davidianus, Ellobius lutescens, Ellobius talpinus, Enhydra lutris, Equus asinus, Equus caballus, Equus przewalskii, Erinaceus europaeus, Erythrocebus patas, Eschrichtius robustus, Eubalaena japonica, Eulemur albifrons, Eulemur collaris, Eulemur coronatus, Eulemur flavifrons, Eulemur fulvus, Eulemur macaco, Eulemur mongoz, Eulemur rubriventer, Eulemur rufus, Eulemur sanfordi, Felis nigripes, Galago moholi, Galago senegalensis, Galagoides demidoff, Galeopterus variegatus, Giraffa tippelskirchi, Glis glis, Gorilla beringei, Gorilla gorilla, Graphiurus murinus, Hapalemur alaotrensis, Hapalemur gilberti, Hapalemur griseus, Hapalemur meridionalis, Hapalemur occidentalis, Helogale parvula, Hemitragus hylocrius, Heterocephalus glaber, Heterohyrax brucei, Hippopotamus amphibius, Hipposideros armiger, Hipposideros galeritus, Hoolock leuconedys, Hyaena hyaena, Hydrochoerus hydrochaeris, Hylobates abbotti, Hylobates agilis, Hylobates klossii, Hylobates pileatus, Hylobates muelleri, Hylobates pileatus, Hystrix cristata, Indri indri, Inia geoffrensis, Jaculus jaculus, Kogia breviceps, Lagothrix lagothricha, Lasiurus borealis, Lemur catta, Leontocebus fuscicollis, Leontocebus illigeri, Leontocebus nigricollis, Leontopithecus chrysomelas, Leontopithecus rosalia, Lepilemur ankaranensis, Lepilemur dorsalis, Lepilemur ruficaudatus, Lepilemur septentrionalis, Leptonychotes weddellii, Lepus americanus, Lipotes vexillifer, Lophocebus aterrimus, Loris lydekkerianus, Loris tardigradus, Loxodonta africana, Lycaon pictus, Macaca arctoides, Macaca assamensis, Macaca cyclopis, Macaca fascicularis, Macaca fuscata, Macaca leonina, Macaca maura, Macaca nigra, Macaca radiata, Macaca siberu, Macaca silenus, Macaca thibetana, Macaca tonkeana, Macroglossus sobrinus, Mandrillus leucophaeus, Mandrillus sphinx, Manis javanica, Manis pentadactyla, Megaderma lyra, Mellivora capensis, Meriones unguiculatus, Mesocricetus auratus, Mesoplodon bidens, Mico argentatus, Mico humeralifer, Mico schneideri, Microcebus murinus, Microgale talazaci, Micronycteris hirsuta, Miniopterus schreibersii, Miopithecus ogouensis, Mirounga angustirostris, Mirza zaza, Monodon monoceros, Mormoops blainvillei, Moschus moschiferus, Mungos mungo, Murina feae, Mus caroli, Mus spretus, Muscardinus avellanarius, Mustela putorius, Myocastor coypus, Myotis myotis, Myrmecophaga tridactyla, Nannospalax galili, Nasalis larvatus, Neomonachus schauinslandi, Neophocaena asiaeorientalis, Noctilio leporinus, Nomascus annamensis, Nomascus concolor, Nomascus gabriellae, Nomascus siki_a, Nomascus siki_b, Nyctereutes procyonoides, Nycticebus bengalensis, Nycticebus coucang, Nycticebus pygmaeus, Ochotona princeps, Octodon degus, Odocoileus virginianus, Okapia johnstoni, Ondatra zibethicus, Onychomys torridus, Orycteropus afer, Oryctolagus cuniculus, Otocyon megalotis, Otolemur crassicaudatus, Ovis aries, Ovis canadensis, Pan paniscus, Pan troglodytes, Panthera onca, Panthera pardus, Panthera tigris, Pantholops hodgsonii, Papio anubis, Papio cynocephalus, Papio hamadryas, Papio kindae, Papio papio, Papio ursinus, Paradoxurus hermaphroditus, Perodicticus ibeanus, Perodicticus potto, Perognathus longimembris, Petromus typicus, Phocoena phocoena, Piliocolobus badius, Piliocolobus gordonorum, Piliocolobus kirkii, Pipistrellus pipistrellus, Pithecia albicans, Pithecia chrysocephala, Pithecia hirsuta, Pithecia mittermeieri, Pithecia pissinattii, Pithecia pithecia, Pithecia vanzolinii, Platanista gangetica, Plecturocebus bernhardi, Plecturocebus brunneus, Plecturocebus caligatus, Plecturocebus cinerascens, Plecturocebus cupreus, Plecturocebus dubius, Plecturocebus grovesi, Plecturocebus hoffmannsi, Plecturocebus miltoni, Plecturocebus moloch, Pongo abelii, Pongo pygmaeus, Presbytis comata, Presbytis mitrata, Procavia capensis, Prolemur simus, Propithecus coronatus, Propithecus diadema, Propithecus edwardsi, Propithecus perrieri, Propithecus tattersalli, Propithecus verreauxi, Psammomys obesus, Pteronura brasiliensis, Puma concolor, Pygathrix cinerea, Pygathrix nigripes, Pygathrix nigripes, Rangifer tarandus, Rhinolophus sinicus, Rhinopithecus bieti, Rhinopithecus strykeri, Rousettus aegyptiacus, Saguinus bicolor, Saguinus geoffroyi, Saguinus imperator, Saguinus inustus, Saguinus labiatus, Saguinus midas, Saguinus mystax, Saguinus oedipus, Saiga tatarica, Saimiri cassiquiarensis, Saimiri macrodon, Saimiri oerstedii, Saimiri sciureus, Saimiri ustus, Sapajus apella, Sapajus macrocephalus, Scalopus aquaticus, Semnopithecus entellus, Semnopithecus hypoleucos, Semnopithecus johnii, Semnopithecus priam, Semnopithecus schistaceus, Semnopithecus vetulus, Sigmodon hispidus, Solenodon paradoxus, Spermophilus dauricus, Spilogale gracilis, Suricata suricatta, Symphalangus syndactylus, Tadarida brasiliensis, Tamandua tetradactyla, Tapirus indicus, Tapirus terrestris, Tarsius lariang, Tarsius wallacei, Thryonomys swinderianus, Tolypeutes matacus, Tonatia saurophila, Trachypithecus auratus, Trachypithecus crepusculus, Trachypithecus cristatus, Trachypithecus francoisi, Trachypithecus geei, Trachypithecus germaini, Trachypithecus hatinhensis, Trachypithecus laotum, Trachypithecus leucocephalus, Trachypithecus melamera, Trachypithecus obscurus, Trachypithecus phayrei, Trachypithecus pileatus, Tragulus javanicus, Trichechus manatus, Tupaia tana, Tursiops truncatus, Uropsilus gracilis, Ursus maritimus, Varecia rubra, Varecia variegata, Vicugna pacos, Vulpes lagopus, Xerus inauris, Zalophus californianus, Zapus hudsonius, Ziphius cavirostris

Table 2. Gene tracks used for codon translation.

Methods

This alignment was created by making three edits (using Cactus) to the 241-way mammalian Zoonomia Cactus alignment ( https://cglgenomics.ucsc.edu/data/cactus/).

• One additional cat genome, "Felis_catus_fca126" (GCA_018350175.1) was added as a sister taxa to the existing "Felis_catus" species
• Five additional canine genomes were also added: canFam4, "Canis_lupus_dingo" (GCA_003254725.1), "Canis_lupus_orion" (GCA_905319855.2), "Nyctereutes_procyonoides" (GCA_905146905.1) and "Otocyon_megalotis" (GCA_017311455.1). "Canis_lupus" from the Zoonomia alignment was also renamed "Canis_lupus_VD" to reflect the fact that it corresponds to a "village dog" and not "wolf" sample.
• The 43-species primates clade from the Zoonomia alignment was removed and replaced with the 243-way primates alignment from Identification of constrained sequence elements across 239 primate genomes, increasing the alignment by 200 additional primate species.

Phylogenic tree

The phylogenic tree was established by the research described in A global catalog of whole-genome diversity from 233 primate species.

Sequences

count	common name	clade	scientific name (link to browser when existing)	taxon id link to NCBI
001	human	primates catarrhini	Homo sapiens/hg38 reference species	9606
002	western gorilla	primates catarrhini	Gorilla gorilla GCA_900006655.3_Susie3	9593
003	Sumatran orangutan	primates catarrhini	Pongo abelii GCA_002880775.3_Susie_PABv2	9601
004	Eastern Gorilla	primates catarrhini	Gorilla beringei	499232
005	chimpanzee	primates catarrhini	Pan troglodytes GCA_002880755.3_Clint_PTRv2	9598
006	Bornean orangutan	primates catarrhini	Pongo pygmaeus	9600
007	Rhesus monkey	primates catarrhini	Macaca mulatta rheMac10	9544
008	gelada	primates catarrhini	Theropithecus gelada GCF_003255815.1_Tgel_1.0	9565
009	stump-tailed macaque	primates catarrhini	Macaca arctoides	9540
010	Northern Talapoin Monkey	primates catarrhini	Miopithecus ogouensis	100488
011	crab-eating macaque	primates catarrhini	Macaca fascicularis	9541
012	Allen's swamp monkey	primates catarrhini	Allenopithecus nigroviridis	54135
013	siamang	primates catarrhini	Symphalangus syndactylus	9590
014	black crested mangabey	primates catarrhini	Lophocebus aterrimus	75566
015	drill	primates catarrhini	Mandrillus leucophaeus	9568
016	Bonnet Macaque	primates catarrhini	Macaca radiata	9548
017	Red-capped Mangabey	primates catarrhini	Cercocebus torquatus	9530
018	Golden-bellied Mangabey	primates catarrhini	Cercocebus chrysogaster	75569
019	Owl-faced Monkey	primates catarrhini	Cercopithecus hamlyni	9536
020	Siberut Macaque	primates catarrhini	Macaca siberu	244255
021	pig-tailed macaque	primates catarrhini	Macaca nemestrina GCF_000956065.1_Mnem_1.0	9545
022	White-naped Mangabey	primates catarrhini	Cercocebus lunulatus (Cercocebus atys lunulatus)	75570
023	Tonkean Macaque	primates catarrhini	Macaca tonkeana	40843
024	Diana Monkey	primates catarrhini	Cercopithecus diana	36224
025	red guenon	primates catarrhini	Erythrocebus patas	9538
026	Northern Pig-tailed Macaque	primates catarrhini	Macaca leonina	90387
027	Moor Macaque	primates catarrhini	Macaca maura	90383
028	Guinea Baboon	primates catarrhini	Papio papio	100937
029	hamadryas baboon	primates catarrhini	Papio hamadryas	9557
030	liontail macaque	primates catarrhini	Macaca silenus	54601
031	olive baboon	primates catarrhini	Papio anubis GCA_000264685.2_Panu_3.0	9555
032	Roloway Monkey	primates catarrhini	Cercopithecus roloway	1137049
033	Kinda Baboon	primates catarrhini	Papio kindae	208091
034	Chacma Baboon	primates catarrhini	Papio ursinus	36229
035	Sun-tailed Monkey	primates catarrhini	Allochrocebus solatus	147650
036	golden snub-nosed monkey	primates catarrhini	Rhinopithecus roxellana GCF_007565055.1_ASM756505v1	61622
037	Vervet Monkey	primates catarrhini	Chlorocebus pygerythrus	60710
038	sooty mangabey	primates catarrhini	Cercocebus atys GCF_000955945.1_Caty_1.0	9531
039	green monkey	primates catarrhini	Chlorocebus sabaeus GCA_000409795.2_Chlorocebus_sabeus_1.1	60711
040	De Brazza's monkey	primates catarrhini	Cercopithecus neglectus	36227
041	Yellow Baboon	primates catarrhini	Papio cynocephalus	9556
042	Celebes crested macaque	primates catarrhini	Macaca nigra	54600
043	proboscis monkey	primates catarrhini	Nasalis larvatus	43780
044	Preuss's Monkey	primates catarrhini	Allochrocebus preussi	147649
045	Putty-nosed Monkey	primates catarrhini	Cercopithecus nictitans	36228
046	Javan Surili	primates catarrhini	Presbytis comata	78452
047	Sykes' Monkey	primates catarrhini	Cercopithecus albogularis	36225
048	LHoests Monkey	primates catarrhini	Allochrocebus lhoesti	100224
049	Crowned Monkey	primates catarrhini	Cercopithecus pogonias	102108
050	Southern Mitered Langur	primates catarrhini	Presbytis mitrata (Presbytis melalophos mitrata)	272115
051	Grey-shanked Douc Langur	primates catarrhini	Pygathrix cinerea	693712
052	Mona monkey	primates catarrhini	Cercopithecus mona	36226
053	Spot-nosed Monkey	primates catarrhini	Cercopithecus petaurista	100487
054	grivet	primates catarrhini	Chlorocebus aethiops	9534
055	Lowes Monkey	primates catarrhini	Cercopithecus lowei	304410
056	Northern Yellow-cheeked Crested Gibbon	primates catarrhini	Nomascus annamensis	1616038
057	Red-cheeked Gibbon	primates catarrhini	Nomascus gabriellae	61852
058	Japanese macaque	primates catarrhini	Macaca fuscata	9542
059	Western Red Colobus	primates catarrhini	Piliocolobus badius	164648
060	southern white-cheeked gibbon	primates catarrhini	Nomascus siki_a	9586
061	Taiwan macaque	primates catarrhini	Macaca cyclopis	78449
062	black-shanked douc langur	primates catarrhini	Pygathrix nigripes	310352
063	King Colobus	primates catarrhini	Colobus polykomos	9572
064	Black Crested Gibbon	primates catarrhini	Nomascus concolor	29089
065	Udzungwa Red Colobus	primates catarrhini	Piliocolobus gordonorum	591933
066	Gee's Golden Langur	primates catarrhini	Trachypithecus geei	164650
067	Kloss's Gibbon	primates catarrhini	Hylobates klossii	9587
068	Spectacled Leaf Monkey	primates catarrhini	Trachypithecus obscurus	54181
069	Zanzibar Red Colobus	primates catarrhini	Piliocolobus kirkii	591937
070	Indochinese Silvered Langur	primates catarrhini	Trachypithecus germaini	271260
071	Hatinh Langur	primates catarrhini	Trachypithecus hatinhensis	867383
072	Moustached Monkey	primates catarrhini	Cercopithecus cephus	9535
073	Laotian Langur	primates catarrhini	Trachypithecus laotum	465718
074	Francois's langur	primates catarrhini	Trachypithecus francoisi	54180
075	Purple-faced Langur	primates catarrhini	Semnopithecus vetulus (Trachypithecus vetulus)	54137
076	Capped Langur	primates catarrhini	Trachypithecus pileatus	164651
077	Ugandan red Colobus	primates catarrhini	Piliocolobus tephrosceles GCF_002776525.2_ASM277652v2	591936
078	Spangled Ebony Langur	primates catarrhini	Trachypithecus auratus	222416
079	Red-tailed Monkey	primates catarrhini	Cercopithecus ascanius	36223
080	Silvery Lutung	primates catarrhini	Trachypithecus cristatus	122765
081	Nilgiri Langur	primates catarrhini	Semnopithecus johnii (Trachypithecus johnii)	66063
082	Indochinese grey langur	primates catarrhini	Trachypithecus crepusculus (Trachypithecus phayrei crepuscula)	272121
083	White-headed langur	primates catarrhini	Trachypithecus leucocephalus (Trachypithecus poliocephalus)	465719
084	pygmy chimpanzee	primates catarrhini	Pan paniscus GCA_000258655.2_panpan1.1	9597
085	northern white-cheeked gibbon	primates catarrhini	Nomascus siki_b	9586
086	Agile Gibbon	primates catarrhini	Hylobates agilis	9579
087	Phayre's Leaf-monkey	primates catarrhini	Trachypithecus melamera	n/a
088	Nepal Gray Langur	primates catarrhini	Semnopithecus schistaceus	2804203
089	Abbott's Gray Gibbon	primates catarrhini	Hylobates abbotti (Hylobates muelleri abbotti)	716694
090	Bornean Gibbon	primates catarrhini	Hylobates muelleri	9588
091	Tufted Gray Langur	primates catarrhini	Semnopithecus priam	1208733
092	Black-footed Gray Langur	primates catarrhini	Semnopithecus hypoleucos	1208734
093	mantled guereza	primates catarrhini	Colobus guereza	33548
094	Hanuman langur	primates catarrhini	Semnopithecus entellus	88029
095	pileated gibbon	primates catarrhini	Hylobates pileatus	9589
096	black snub-nosed monkey	primates catarrhini	Rhinopithecus bieti	61621
097	Burmese snub-nosed monkey	primates catarrhini	Rhinopithecus strykeri	1194336
098	Angolan colobus	primates catarrhini	Colobus angolensis colAng1	54131
099	Pileated Gibbon	primates catarrhini	Hylobates pileatus	9589
100	black-shanked douc langur	primates catarrhini	Pygathrix nigripes	310352
101	Milne-edwards' Macaque	primates catarrhini	Macaca thibetana	54602
102	Phayre's Leaf-monkey	primates catarrhini	Trachypithecus phayrei	61618
103	Assam macaque	primates catarrhini	Macaca assamensis	9551
104	Eastern hoolock gibbon	primates catarrhini	Hoolock leuconedys	61851
105	mandrill	primates catarrhini	Mandrillus sphinx	9561
106	White-faced Saki	primates platyrrhini	Pithecia chrysocephala	2946515
107	Monk Saki	primates platyrrhini	Pithecia hirsuta	2946516
108	white-faced saki	primates platyrrhini	Pithecia pithecia	43777
109	Mittermeier's Tapaj�s saki	primates platyrrhini	Pithecia mittermeieri	2946517
110	Buffy Saki	primates platyrrhini	Pithecia albicans	2946514
111	Pissinatti's saki	primates platyrrhini	Pithecia pissinattii (Pithecia pissinatti)	2946518
112	Vanzolini's Bald-faced Saki	primates platyrrhini	Pithecia vanzolinii	2946519
113	Bald-headed Uacari	primates platyrrhini	Cacajao calvus	30596
114	Ayres Black Uakari	primates platyrrhini	Cacajao ayresi	535896
115	Black-headed Uacari	primates platyrrhini	Cacajao melanocephalus	70825
116	Black-headed Uacari	primates platyrrhini	Cacajao hosomi	535897
117	Reddish-brown bearded saki	primates platyrrhini	Chiropotes sagulatus (Chiropotes chiropotes)	658221
118	brown-backed bearded saki	primates platyrrhini	Chiropotes israelita	280163
119	Collared Titi Monkey	primates platyrrhini	Cheracebus lugens	210166
120	Brown Titi Monkey	primates platyrrhini	Plecturocebus brunneus	1812042
121	Hoffmanns's titi monkey	primates platyrrhini	Plecturocebus hoffmannsi	78255
122	Milton's Titi Monkey	primates platyrrhini	Plecturocebus miltoni	1812038
123	Widow Monkey	primates platyrrhini	Cheracebus torquatus	30592
124	Ashy Black Titi Monkey	primates platyrrhini	Plecturocebus cinerascens	1812037
125	Prince Bernhard's Titi Monkey	primates platyrrhini	Plecturocebus bernhardi	1812036
126	Yellow-handed Titi Monkey	primates platyrrhini	Cheracebus lucifer	2487712
127	Coppery Titi Monkey	primates platyrrhini	Plecturocebus cupreus	202457
128	Chestnut-bellied Titi	primates platyrrhini	Plecturocebus caligatus	867332
129	Hershkovitzs Titi	primates platyrrhini	Plecturocebus dubius	2946520
130	Red-bellied Titi Monkey	primates platyrrhini	Plecturocebus moloch	9523
131	Groves' Titi	primates platyrrhini	Plecturocebus grovesi	2488670
132	black-handed spider monkey	primates platyrrhini	Ateles geoffroyi_a	9509
133	Widow Monkey	primates platyrrhini	Cheracebus regulus	1812110
134	Guiana Spider Monkey	primates platyrrhini	Ateles paniscus	9510
135	Black-faced Black Spider Monkey	primates platyrrhini	Ateles chamek	118643
136	White-cheeked Spider Monkey	primates platyrrhini	Ateles marginatus	1529884
137	White-bellied Spider Monkey	primates platyrrhini	Ateles belzebuth	9507
138	Common Woolly Monkey	primates platyrrhini	Lagothrix lagothricha (Lagothrix lagotricha)	9519
139	large-headed capuchin	primates platyrrhini	Sapajus macrocephalus (Sapajus apella macrocephalus)	1547595
140	Spixs White-fronted Capuchin	primates platyrrhini	Cebus unicolor	1985288
141	Central American spider monkey	primates platyrrhini	Ateles geoffroyi_b	9509
142	Guinan Weeper Capuchin	primates platyrrhini	Cebus olivaceus	37295
143	mantled howler monkey	primates platyrrhini	Alouatta palliata	30589
144	white-fronted capuchin	primates platyrrhini	Cebus albifrons	9514
145	Northern Night Monkey	primates platyrrhini	Aotus trivirgatus	9505
146	Grey-handed Night Monkey	primates platyrrhini	Aotus griseimembra	292213
147	Black-and-gold Howler Monkey	primates platyrrhini	Alouatta caraya	9502
148	Spixs Night Monkey	primates platyrrhini	Aotus vociferans	57176
149	Red-handed Howler Monkey	primates platyrrhini	Alouatta belzebul	30590
150	Red-handed Howler Monkey	primates platyrrhini	Alouatta discolor	2905217
151	Azara's Night Monkey	primates platyrrhini	Aotus azarae (Aotus azarai)	30591
152	Pur�s Red Howler Monkey	primates platyrrhini	Alouatta puruensis (Alouatta seniculus puruensis)	1347729
153	Black Howler Monkey	primates platyrrhini	Alouatta nigerrima (Alouatta belzebul)	30590
154	Guianan Red Howler Monkey	primates platyrrhini	Alouatta macconnelli	198115
155	Colombian Red Howler Monkey	primates platyrrhini	Alouatta juara	2946512
156	Colombian Red Howler Monkey	primates platyrrhini	Alouatta seniculus	9503
157	tufted capuchin	primates platyrrhini	Sapajus apella	9515
158	Ma's night monkey	primates platyrrhini	Aotus nancymaae GCA_000952055.2_Anan_2.0	37293
159	Bolivian squirrel monkey	primates platyrrhini	Saimiri boliviensis GCF_016699345.1_BCM_Sbol_2.0	27679
160	White-nosed Saki	primates platyrrhini	Chiropotes albinasus	198627
161	Black Mantle Tamarin	primates platyrrhini	Leontocebus nigricollis	9489
162	brown-mantled tamarin	primates platyrrhini	Leontocebus fuscicollis	9487
163	Illiger's saddle-back tamarin	primates platyrrhini	Leontocebus illigeri (Leontocebus fuscicollis illigeri)	881947
164	Cotton-headed Tamarin	primates platyrrhini	Saguinus oedipus	9490
165	Pied Tamarin	primates platyrrhini	Saguinus bicolor	37588
166	Geoffroy's Tamarin	primates platyrrhini	Saguinus geoffroyi	43778
167	White-fronted Titi Monkey	primates platyrrhini	Saguinus inustus	1079039
168	Moustached Tamarin	primates platyrrhini	Saguinus mystax	9488
169	tamarin	primates platyrrhini	Saguinus imperator	9491
170	Guianan Squirrel Monkey	primates platyrrhini	Saimiri sciureus	9521
171	Red-chested Mustached Tamarin	primates platyrrhini	Saguinus labiatus	78454
172	Goeldi's Monkey	primates platyrrhini	Callimico goeldii	9495
173	Black-crowned Central American Squirrel Monkey	primates platyrrhini	Saimiri oerstedii	70928
174	Golden-headed Lion Tamarin	primates platyrrhini	Leontopithecus chrysomelas	57374
175	golden lion tamarin	primates platyrrhini	Leontopithecus rosalia	30588
176	Humboldt's Squirrel Monkey	primates platyrrhini	Saimiri cassiquiarensis	2946521
177	bare-eared squirrel monkey	primates platyrrhini	Saimiri ustus	66265
178	Ecuadorian squirrel monkey	primates platyrrhini	Saimiri macrodon	2946522
179	white-tufted-ear marmoset	primates platyrrhini	Callithrix jacchus	9483
180	Eastern Pygmy Marmoset	primates platyrrhini	Cebuella niveiventris	2826950
181	Western Pygmy Marmoset	primates platyrrhini	Cebuella pygmaea	9493
182	Black And White Tassel-ear Marmoset	primates platyrrhini	Mico humeralifer	52232
183	Black-crowned Dwarf Marmoset	primates platyrrhini	Callibella humilis (Mico humilis)	666519
184	Mico schneideri	primates platyrrhini	Mico schneideri	n/a
185	Silvery Marmoset	primates platyrrhini	Mico argentatus	9482
186	Midas tamarin	primates platyrrhini	Saguinus midas	30586
187	Wieds Marmoset	primates platyrrhini	Callithrix kuhlii	867363
188	Geoffroy's Tufted-ear Marmoset	primates platyrrhini	Callithrix geoffroyi	52231
189	Horsfield's tarsier	primates tarsiidae	Cephalopachus bancanus	9477
190	Philippine tarsier	primates tarsiidae	Carlito syrichta tarSyr2	1868482
191	Lariang Tarsier	primates tarsiidae	Tarsius lariang	630277
192	Wallace's Tarsier	primates tarsiidae	Tarsius wallacei	981131
193	aye-aye	primates strepsirrhini	Daubentonia madagascariensis	31869
194	Crowned Sifaka	primates strepsirrhini	Propithecus coronatus (Propithecus deckenii coronatus)	475619
195	Perrier's Sifaka	primates strepsirrhini	Propithecus perrieri	989338
196	ruffed lemur	primates strepsirrhini	Varecia variegata	9455
197	Diademed Sifaka	primates strepsirrhini	Propithecus diadema	83281
198	Milne-Edwards Sifaka	primates strepsirrhini	Propithecus edwardsi	543559
199	babakoto	primates strepsirrhini	Indri indri	34827
200	Golden-crowned Sifaka	primates strepsirrhini	Propithecus tattersalli	30601
201	Eastern Woolly Lemur	primates strepsirrhini	Avahi laniger	122246
202	Verreauxs Sifaka	primates strepsirrhini	Propithecus verreauxi	34825
203	Peyrieras Woolly Lemur	primates strepsirrhini	Avahi peyrierasi	1313323
204	Red Ruffed Lemur	primates strepsirrhini	Varecia rubra	554167
205	greater bamboo lemur	primates strepsirrhini	Prolemur simus	1328070
206	Red-bellied Lemur	primates strepsirrhini	Eulemur rubriventer	34829
207	mongoose lemur	primates strepsirrhini	Eulemur mongoz	34828
208	Geoffroys Dwarf Lemur	primates strepsirrhini	Cheirogaleus major	47177
209	Crowned Lemur	primates strepsirrhini	Eulemur coronatus	13514
210	black lemur	primates strepsirrhini	Eulemur macaco	30602
211	lesser dwarf lemur	primates strepsirrhini	Cheirogaleus medius	9460
212	Sclater's lemur	primates strepsirrhini	Eulemur flavifrons	87288
213	Coquerel's sifaka	primates strepsirrhini	Propithecus coquerelli (Propithecus coquereli) proCoq1	379532
214	Collared Brown Lemur	primates strepsirrhini	Eulemur collaris (Eulemur fulvus collaris)	47178
215	Red-tailed Sportive Lemur	primates strepsirrhini	Lepilemur ruficaudatus	78866
216	Red Brown Lemur	primates strepsirrhini	Eulemur rufus	859983
217	Sanfords Brown Lemur	primates strepsirrhini	Eulemur sanfordi	122225
218	White-fronted Lemur	primates strepsirrhini	Eulemur albifrons	1215604
219	Gray's Sportive Lemur	primates strepsirrhini	Lepilemur dorsalis	78583
220	brown lemur	primates strepsirrhini	Eulemur fulvus	13515
221	Sahafary Sportive Lemur	primates strepsirrhini	Lepilemur septentrionalis	78584
222	Sambirano Lesser Bamboo Lemur	primates strepsirrhini	Hapalemur occidentalis	867377
223	Alaotra Reed Lemur	primates strepsirrhini	Hapalemur alaotrensis (Hapalemur griseus alaotrensis)	122220
224	Eastern Lesser Bamboo Lemur	primates strepsirrhini	Hapalemur griseus	13557
225	Ankarana Sportive Lemur	primates strepsirrhini	Lepilemur ankaranensis	342401
226	ring-tailed lemur	primates strepsirrhini	Lemur catta	9447
227	gray bamboo lemur	primates strepsirrhini	Hapalemur gilberti	3043110
228	Rusty-gray Lesser Bamboo Lemur	primates strepsirrhini	Hapalemur meridionalis	3043112
229	Demidoffs Dwarf Galago	primates strepsirrhini	Galagoides demidoff	89672
230	northern giant mouse lemur	primates strepsirrhini	Mirza zaza	339999
231	gray mouse lemur	primates strepsirrhini	Microcebus murinus GCA_000165445.3_Mmur_3.0	30608
232	small-eared galago	primates strepsirrhini	Otolemur garnettii otoGar3	30611
233	Northern Lesser Galago	primates strepsirrhini	Galago senegalensis	9465
234	Thick-tailed Greater Galago	primates strepsirrhini	Otolemur crassicaudatus	9463
235	Grey Slender Loris	primates strepsirrhini	Loris lydekkerianus	300163
236	slender loris	primates strepsirrhini	Loris tardigradus	9468
237	West African Potto	primates strepsirrhini	Perodicticus potto	9472
238	East African Potto	primates strepsirrhini	Perodicticus ibeanus (Perodicticus potto ibeanus)	261737
239	Moholi bushbaby	primates strepsirrhini	Galago moholi	30609
240	Pygmy Slow Loris	primates strepsirrhini	Nycticebus pygmaeus (Xanthonycticebus pygmaeus)	101278
241	Bengal slow loris	primates strepsirrhini	Nycticebus bengalensis	261741
242	Calabar Angwantibo	primates strepsirrhini	Arctocebus calabarensis	261739
243	slow loris	primates strepsirrhini	Nycticebus coucang	9470
244	jaguar	carnivora	Panthera onca GCA_004023805.1_PanOnc_v1_BIUU	9690
245	leopard	carnivora	Panthera pardus GCA_001857705.1_PanPar1.0	9691
246	giant panda	carnivora	Ailuropoda melanoleuca GCA_002007445.1_ASM200744v1	9646
247	Hawaiian monk seal	carnivora	Neomonachus schauinslandi GCA_002201575.1_ASM220157v1	29088
248	California sea lion	carnivora	Zalophus californianus GCA_004024565.1_ZalCal_v1_BIUU	9704
249	Greenland wolf	carnivora	Canis lupus orion GCA_905319855.2_mCanLor1.2	2605939
250	Pacific walrus	carnivora	Odobenus rosmarus odoRosDiv1	9707
251	domestic cat (Fca126)	carnivora	Felis catus fca126 (Felis catus) GCF_018350175.1_F.catus_Fca126_mat1.0	9685
252	northern elephant seal	carnivora	Mirounga angustirostris GCA_004023865.1_MirAng_v1_BIUU	9716
253	domestic cat	carnivora	Felis catus felCat8	9685
254	domestic dog (BS72/Village Dog)	carnivora	Canis lupus familiaris GCA_004027395.1_CanFam_VD_v1_BIUU
255	German Shepherd dog (Mischka)	carnivora	Canis lupus familiaris (CanFam4) (Canis lupus familiaris) canFam4
256	dingo	carnivora	Canis lupus dingo	286419
257	raccoon dog	carnivora	Nyctereutes procyonoides	34880
258	fossa	carnivora	Cryptoprocta ferox	94188
259	polar bear	carnivora	Ursus maritimus GCA_000687225.1_UrsMar_1.0	29073
260	Asian palm civet	carnivora	Paradoxurus hermaphroditus GCA_004024585.1_ParHer_v1_BIUU	71117
261	African hunting dog	carnivora	Lycaon pictus GCA_001887905.1_LycPicSAfr1.0	9622
262	Arctic fox	carnivora	Vulpes lagopus GCA_004023825.1_VulLag_v1_BIUU	494514
263	dog	carnivora	Canis lupus familiaris GCF_000002285.3_CanFam3.1	9615
264	striped hyena	carnivora	Hyaena hyaena GCA_004023945.1_HyaHya_v1_BIUU	95912
265	n/a	carnivora	Acinonyx jubatus GCA_001443585.1_aciJub1	32536
266	tiger	carnivora	Panthera tigris GCA_000464555.1_PanTig1.0	9694
267	Sea otter	carnivora	Enhydra lutris GCA_002288905.2_ASM228890v2	34882
268	giant otter	carnivora	Pteronura brasiliensis	9672
269	bat-eared fox	carnivora	Otocyon megalotis	9624
270	Weddell seal	carnivora	Leptonychotes weddellii GCA_000349705.1_LepWed1.0	9713
271	Lesser panda	carnivora	Ailurus fulgens GCA_002007465.1_ASM200746v1	9649
272	ratel	carnivora	Mellivora capensis GCA_004024625.1_MelCap_v1_BIUU	9664
273	banded mongoose	carnivora	Mungos mungo GCA_004023785.1_MunMun_v1_BIUU	210652
274	dwarf mongoose	carnivora	Helogale parvula GCA_004023845.1_HelPar_v1_BIUU	210647
275	meerkat	carnivora	Suricata suricatta GCA_004023905.1_SurSur_v1_BIUU	37032
276	puma	carnivora	Puma concolor GCA_003327715.1_PumCon1.0	9696
277	black-footed cat	carnivora	Felis nigripes GCA_004023925.1_FelNig_v1_BIUU	61379
278	European polecat	carnivora	Mustela putorius GCA_000239315.1_MusPutFurMale1.0	9668
279	western spotted skunk	carnivora	Spilogale gracilis GCA_004023965.1_SpiGra_v1_BIUU	30551
280	Sumatran rhinoceros	laurasiatheria	Dicerorhinus sumatrensis GCA_002844835.1_ASM284483v1	89632
281	black rhinoceros	laurasiatheria	Diceros bicornis GCA_004027315.1_DicBicMic_v1_BIUU	9805
282	Asiatic tapir	laurasiatheria	Tapirus indicus GCA_004024905.1_TapInd_v1_BIUU	9802
283	Brazilian tapir	laurasiatheria	Tapirus terrestris GCA_004025025.1_TapTer_v1_BIUU	9801
284	northern white rhinoceros	laurasiatheria	Ceratotherium simum cottoni	310713
285	ass	laurasiatheria	Equus asinus GCA_001305755.1_ASM130575v1	9793
286	Southern white rhinoceros	laurasiatheria	Ceratotherium simum GCA_000283155.1_CerSimSim1.0	9807
287	Przewalski's horse	laurasiatheria	Equus przewalskii GCA_000696695.1_Burgud	9798
288	horse	laurasiatheria	Equus caballus GCA_000002305.1_EquCab2.0	9796
289	Malayan pangolin	laurasiatheria	Manis javanica GCA_001685135.1_ManJav1.0	9974
290	Chinese pangolin	laurasiatheria	Manis pentadactyla GCA_000738955.1_M_pentadactyla-1.1.1	143292
291	Hispaniolan solenodon	laurasiatheria	Solenodon paradoxus	79805
292	eastern mole	laurasiatheria	Scalopus aquaticus GCA_004024925.1_ScaAqu_v1_BIUU	71119
293	gracile shrew mole	laurasiatheria	Uropsilus gracilis GCA_004024945.1_UroGra_v1_BIUU	182669
294	star-nosed mole	laurasiatheria	Condylura cristata GCF_000260355.1_ConCri1.0	143302
295	western European hedgehog	laurasiatheria	Erinaceus europaeus GCA_000296755.1_EriEur2.0	9365
296	European shrew	laurasiatheria	Sorex araneus sorAra2	42254
297	Indochinese shrew	laurasiatheria	Crocidura indochinensis GCA_004027635.1_CroInd_v1_BIUU	876679
298	Hoffmann's two-fingered sloth	xenarthra	Choloepus hoffmanni GCA_000164785.2_C_hoffmanni-2.0.1	9358
299	nine-banded armadillo	xenarthra	Dasypus novemcinctus GCA_000208655.2_Dasnov3.0	9361
300	giant anteater	xenarthra	Myrmecophaga tridactyla GCA_004026745.1_MyrTri_v1_BIUU	71006
301	southern tamandua	xenarthra	Tamandua tetradactyla GCA_004025105.1_TamTet_v1_BIUU	48850
302	placentals	xenarthra	Tolypeutes matacus	183749
303	southern two-toed sloth	xenarthra	Choloepus didactylus GCA_004027855.1_ChoDid_v1_BIUU	27675
304	screaming hairy armadillo	xenarthra	Chaetophractus vellerosus GCA_004027955.1_ChaVel_v1_BIUU	340076
305	North Pacific right whale	artiodactyla	Eubalaena japonica	302098
306	grey whale	artiodactyla	Eschrichtius robustus	9764
307	hippopotamus	artiodactyla	Hippopotamus amphibius GCA_004027065.1_HipAmp_v1_BIUU	9833
308	Minke whale	artiodactyla	Balaenoptera acutorostrata GCA_000493695.1_BalAcu1.0	9767
309	beluga whale	artiodactyla	Delphinapterus leucas GCA_002288925.2_ASM228892v2	9749
310	Antarctic minke whale	artiodactyla	Balaenoptera bonaerensis GCA_000978805.1_ASM97880v1	33556
311	boutu	artiodactyla	Inia geoffrensis	9725
312	harbor porpoise	artiodactyla	Phocoena phocoena	9742
313	narwhal	artiodactyla	Monodon monoceros GCA_004026685.1_MonMon_M_v1_BIUU	40151
314	Yangtze River dolphin	artiodactyla	Lipotes vexillifer GCA_000442215.1_Lipotes_vexillifer_v1	118797
315	killer whale	artiodactyla	Orcinus orca orcOrc1	9733
316	Ganges River dolphin	artiodactyla	Platanista gangetica	118798
317	Yangtze finless porpoise	artiodactyla	Neophocaena asiaeorientalis GCA_003031525.1_Neophocaena_asiaeorientalis_V1	189058
318	Sowerby's beaked whale	artiodactyla	Mesoplodon bidens	48745
319	alpaca	artiodactyla	Vicugna pacos GCA_000767525.1_Vi_pacos_V1.0	30538
320	Cuvier's beaked whale"	artiodactyla	Ziphius cavirostris	9760
321	Bactrian camel	artiodactyla	Camelus bactrianus GCA_000767855.1_Ca_bactrianus_MBC_1.0	9837
322	Arabian camel	artiodactyla	Camelus dromedarius GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0	9838
323	wild Bactrian camel	artiodactyla	Camelus ferus GCA_000311805.2_CB1	419612
324	pygmy sperm whale	artiodactyla	Kogia breviceps	27615
325	Chacoan peccary	artiodactyla	Catagonus wagneri GCA_004024745.1_CatWag_v1_BIUU	51154
326	reindeer	artiodactyla	Rangifer tarandus GCA_004026565.1_RanTarSib_v1_BIUU	9870
327	Pere David's deer	artiodactyla	Elaphurus davidianus GCA_002443075.1_Milu1.0	43332
328	okapi	artiodactyla	Okapia johnstoni GCA_001660835.1_ASM166083v1	86973
329	Masai giraffe	artiodactyla	Giraffa tippelskirchi GCA_001651235.1_ASM165123v1	439328
330	Siberian musk deer	artiodactyla	Moschus moschiferus GCA_004024705.1_MosMos_v1_BIUU	68415
331	water buffalo	artiodactyla	Bubalus bubalis GCA_000471725.1_UMD_CASPUR_WB_2.0	89462
332	cow	artiodactyla	Bos taurus GCA_000003205.6_Btau_5.0.1	9913
333	pronghorn	artiodactyla	Antilocapra americana GCA_004027515.1_AntAmePen_v1_BIUU	9891
334	white-tailed deer	artiodactyla	Odocoileus virginianus GCA_002102435.1_Ovir.te_1.0	9874
335	aoudad	artiodactyla	Ammotragus lervia GCA_002201775.1_ALER1.0	9899
336	bighorn sheep	artiodactyla	Ovis canadensis GCA_004026945.1_OviCan_v1_BIUU	37174
337	goat	artiodactyla	Capra hircus GCA_001704415.1_ARS1	9925
338	Nilgiri tahr	artiodactyla	Hemitragus hylocrius GCA_004026825.1_HemHyl_v1_BIUU	330464
339	hirola	artiodactyla	Beatragus hunteri GCA_004027495.1_BeaHun_v1_BIUU	59527
340	wild yak	artiodactyla	Bos mutus bosMut1	72004
341	American bison	artiodactyla	Bison bison GCA_000754665.1_Bison_UMD1.0	9901
342	sheep	artiodactyla	Ovis aries GCA_000298735.2_Oar_v4.0	9940
343	chiru	artiodactyla	Pantholops hodgsonii GCA_000400835.1_PHO1.0	59538
344	wild goat	artiodactyla	Capra aegagrus GCA_000978405.1_CapAeg_1.0	9923
345	Java mouse-deer	artiodactyla	Tragulus javanicus GCA_004024965.1_TraJav_v1_BIUU	9849
346	pig	artiodactyla	Sus scrofa susScr3	9823
347	zebu cattle	artiodactyla	Bos indicus GCA_000247795.2_Bos_indicus_1.0	9915
348	common bottlenose dolphin	artiodactyla	Tursiops truncatus GCA_001922835.1_NIST_Tur_tru_v1	9739
349	Saiga antelope	artiodactyla	Saiga tatarica GCA_004024985.1_SaiTat_v1_BIUU	34875
350	Chinese rufous horseshoe bat	chiroptera	Rhinolophus sinicus GCA_001888835.1_ASM188883v1	89399
351	black flying fox	chiroptera	Pteropus alecto pteAle1	9402
352	Cantor's roundleaf bat	chiroptera	Hipposideros galeritus	58069
353	Egyptian rousette	chiroptera	Rousettus aegyptiacus GCA_004024865.1_RouAeg_v1_BIUU	9407
354	long-tongued fruit bat	chiroptera	Macroglossus sobrinus	326083
355	large flying fox	chiroptera	Pteropus vampyrus GCF_000151845.1_Pvam_2.0	132908
356	Brazilian free-tailed bat	chiroptera	Tadarida brasiliensis GCA_004025005.1_TadBra_v1_BIUU	9438
357	great roundleaf bat	chiroptera	Hipposideros armiger GCA_001890085.1_ASM189008v1	186990
358	straw-colored fruit bat	chiroptera	Eidolon helvum eidHel1	77214
359	Antillean ghost-faced bat	chiroptera	Mormoops blainvillei GCA_004026545.1_MorMeg_v1_BIUU	118852
360	tailed tailless bat	chiroptera	Anoura caudifer GCA_004027475.1_AnoCau_v1_BIUU	27642
361	common vampire bat	chiroptera	Desmodus rotundus GCA_002940915.2_ASM294091v2	9430
362	hairy big-eared bat	chiroptera	Micronycteris hirsuta GCA_004026765.1_MicHir_v1_BIUU	148065
363	stripe-headed round-eared bat	chiroptera	Tonatia saurophila GCA_004024845.1_TonSau_v1_BIUU	171122
364	Seba's short-tailed bat	chiroptera	Carollia perspicillata GCA_004027735.1_CarPer_v1_BIUU	40233
365	Jamaican fruit-eating bat	chiroptera	Artibeus jamaicensis GCA_004027435.1_ArtJam_v1_BIUU	9417
366	Indian false vampire	chiroptera	Megaderma lyra GCA_004026885.1_MegLyr_v1_BIUU	9413
367	Schreibers' long-fingered bat	chiroptera	Miniopterus schreibersii GCA_004026525.1_MinSch_v1_BIUU	9433
368	greater bulldog bat	chiroptera	Noctilio leporinus GCA_004026585.1_NocLep_v1_BIUU	94963
369	Natal long-fingered bat	chiroptera	Miniopterus natalensis GCF_001595765.1_Mnat.v1	291302
370	hog-nosed bat	chiroptera	Craseonycteris thonglongyai GCA_004027555.1_CraTho_v1_BIUU	208972
371	Parnell's mustached bat	chiroptera	Pteronotus parnellii ptePar1	59476
372	greater mouse-eared bat	chiroptera	Myotis myotis GCA_004026985.1_MyoMyo_v1_BIUU	51298
373	Ashy-gray tube-nosed bat	chiroptera	Murina feae (Murina aurata feae) GCA_004026665.1_MurFea_v1_BIUU	1453894
374	David's myotis	chiroptera	Myotis davidii myoDav1	225400
375	Brandt's bat	chiroptera	Myotis brandtii myoBra1	109478
376	big brown bat	chiroptera	Eptesicus fuscus GCF_000308155.1_EptFus1.0	29078
377	red bat	chiroptera	Lasiurus borealis GCA_004026805.1_LasBor_v1_BIUU	258930
378	little brown bat	chiroptera	Myotis lucifugus myoLuc2	59463
379	common pipistrelle	chiroptera	Pipistrellus pipistrellus GCA_004026625.1_PipPip_v1_BIUU	59474
380	African savanna elephant	afrotheria	Loxodonta africana GCA_000001905.1_Loxafr3.0	9785
381	Florida manatee	afrotheria	Trichechus manatus GCA_000243295.1_TriManLat1.0	9778
382	yellow-spotted hyrax	afrotheria	Heterohyrax brucei GCA_004026845.1_HetBruBak_v1_BIUU	77598
383	Cape rock hyrax	afrotheria	Procavia capensis GCA_004026925.1_ProCapCap_v1_BIUU	9813
384	aardvark	afrotheria	Orycteropus afer	9818
385	Cape golden mole	afrotheria	Chrysochloris asiatica GCA_004027935.1_ChrAsi_v1_BIUU	185453
386	Cape elephant shrew	afrotheria	Elephantulus edwardii eleEdw1	28737
387	Talazac's shrew tenrec	afrotheria	Microgale talazaci (Nesogale talazaci) GCA_004026705.1_MicTal_v1_BIUU	2583312
388	small Madagascar hedgehog	afrotheria	Echinops telfairi GCA_000313985.1_EchTel2.0	9371
389	Sunda flying lemur	euarchontoglires	Galeopterus variegatus GCA_004027255.1_GalVar_v1_BIUU	482537
390	Chinese tree shrew	euarchontoglires	Tupaia chinensis tupChi1	246437
391	South African ground squirrel	euarchontoglires	Xerus inauris GCA_004024805.1_XerIna_v1_BIUU	234690
392	large tree shrew	euarchontoglires	Tupaia tana	70687
393	mountain beaver	euarchontoglires	Aplodontia rufa GCA_004027875.1_AplRuf_v1_BIUU	51342
394	Alpine marmot	euarchontoglires	Marmota marmota GCF_001458135.1_marMar2.1	9993
395	Daurian ground squirrel	euarchontoglires	Spermophilus dauricus GCA_002406435.1_ASM240643v1	99837
396	crested porcupine	euarchontoglires	Hystrix cristata GCA_004026905.1_HysCri_v1_BIUU	10137
397	thirteen-lined ground squirrel	euarchontoglires	Ictidomys tridecemlineatus speTri2	43179
398	American beaver	euarchontoglires	Castor canadensis GCA_004027675.1_CasCan_v1_BIUU	51338
399	long-tailed chinchilla	euarchontoglires	Chinchilla lanigera chiLan1	34839
400	punctate agouti	euarchontoglires	Dasyprocta punctata	34846
401	pacarana	euarchontoglires	Dinomys branickii GCA_004027595.1_DinBra_v1_BIUU	108858
402	fat dormouse	euarchontoglires	Glis glis GCA_004027185.1_GliGli_v1_BIUU	41261
403	northern gundi	euarchontoglires	Ctenodactylus gundi GCA_004027205.1_CteGun_v1_BIUU	10166
404	naked mole-rat	euarchontoglires	Heterocephalus glaber GCA_000247695.1_HetGla_female_1.0	10181
405	Patagonian cavy	euarchontoglires	Dolichotis patagonum GCA_004027295.1_DolPat_v1_BIUU	29091
406	capybara	euarchontoglires	Hydrochoerus hydrochaeris GCA_004027455.1_HydHyd_v1_BIUU	10149
407	Montane guinea pig	euarchontoglires	Cavia tschudii GCA_004027695.1_CavTsc_v1_BIUU	143287
408	domestic guinea pig	euarchontoglires	Cavia porcellus GCA_000151735.1_Cavpor3.0	10141
409	degu	euarchontoglires	Octodon degus GCA_000260255.1_OctDeg1.0	10160
410	lowland paca	euarchontoglires	Cuniculus paca	108852
411	social tuco-tuco	euarchontoglires	Ctenomys sociabilis GCA_004027165.1_CteSoc_v1_BIUU	43321
412	Damara mole-rat	euarchontoglires	Fukomys damarensis fukDam1	885580
413	woodland dormouse	euarchontoglires	Graphiurus murinus	51346
414	Desmarest's hutia	euarchontoglires	Capromys pilorides GCA_004027915.1_CapPil_v1_BIUU	34842
415	Upper Galilee mountains blind mole rat	euarchontoglires	Nannospalax galili GCA_000622305.1_S.galili_v1.0	1026970
416	nutria	euarchontoglires	Myocastor coypus GCA_004027025.1_MyoCoy_v1_BIUU	10157
417	hazel dormouse	euarchontoglires	Muscardinus avellanarius GCA_004027005.1_MusAve_v1_BIUU	39082
418	dassie-rat	euarchontoglires	Petromus typicus GCA_004026965.1_PetTyp_v1_BIUU	10183
419	greater cane rat	euarchontoglires	Thryonomys swinderianus GCA_004025085.1_ThrSwi_v1_BIUU	10169
420	snowshoe hare	euarchontoglires	Lepus americanus GCA_004026855.1_LepAme_v1_BIUU	48086
421	Gambian giant pouched rat	euarchontoglires	Cricetomys gambianus GCA_004027575.1_CriGam_v1_BIUU	10085
422	Prairie deer mouse	euarchontoglires	Peromyscus maniculatus GCF_000500345.1_Pman_1.0	10042
423	southern grasshopper mouse	euarchontoglires	Onychomys torridus GCA_004026725.1_OnyTor_v1_BIUU	38674
424	rabbit	euarchontoglires	Oryctolagus cuniculus GCA_000003625.1_OryCun2.0	9986
425	muskrat	euarchontoglires	Ondatra zibethicus GCA_004026605.1_OndZib_v1_BIUU	10060
426	northern mole vole	euarchontoglires	Ellobius talpinus GCA_001685095.1_ETalpinus_0.1	329620
427	Mongolian gerbil	euarchontoglires	Meriones unguiculatus GCA_004026785.1_MerUng_v1_BIUU	10047
428	fat sand rat	euarchontoglires	Psammomys obesus GCA_002215935.1_ASM221593v1	48139
429	house mouse	euarchontoglires	Mus musculus mm10	10090
430	Chinese hamster	euarchontoglires	Cricetulus griseus GCA_900186095.1_CHOK1S_HZDv1	10029
431	Norway rat	euarchontoglires	Rattus norvegicus GCF_000001895.5_Rnor_6.0	10116
432	western wild mouse	euarchontoglires	Mus spretus GCA_001624865.1_SPRET_EiJ_v1	10096
433	meadow jumping mouse	euarchontoglires	Zapus hudsonius GCA_004024765.1_ZapHud_v1_BIUU	160400
434	prairie vole	euarchontoglires	Microtus ochrogaster micOch1	79684
435	Ryukyu mouse	euarchontoglires	Mus caroli GCA_900094665.2_CAROLI_EIJ_v1.1	10089
436	Egyptian spiny mouse	euarchontoglires	Acomys cahirinus GCA_004027535.1_AcoCah_v1_BIUU	10068
437	Gobi jerboa	euarchontoglires	Allactaga bullata (Orientallactaga bullata) GCA_004027895.1_AllBul_v1_BIUU	1041416
438	shrew mouse	euarchontoglires	Mus pahari GCF_900095145.1_PAHARI_EIJ_v1.1	10093
439	Transcaucasian mole vole	euarchontoglires	Ellobius lutescens GCA_001685075.1_ASM168507v1	39086
440	hispid cotton rat	euarchontoglires	Sigmodon hispidus GCA_004025045.1_SigHis_v1_BIUU	42415
441	lesser Egyptian jerboa	euarchontoglires	Jaculus jaculus GCA_000280705.1_JacJac1.0	51337
442	Brazilian guinea pig	euarchontoglires	Cavia aperea cavApe1	37548
443	golden hamster	euarchontoglires	Mesocricetus auratus GCA_000349665.1_MesAur1.0	10036
444	Stephens's kangaroo rat	euarchontoglires	Dipodomys stephensi GCA_004024685.1_DipSte_v1_BIUU	323379
445	American pika	euarchontoglires	Ochotona princeps GCA_000292845.1_OchPri3.0	9978
446	Ord's kangaroo rat	euarchontoglires	Dipodomys ordii dipOrd2	10020
447	little pocket mouse	euarchontoglires	Perognathus longimembris	38669

Table 1. Genome assemblies included in the 447-way Conservation track.

References

Kuderna LFK, Ulirsch JC, Rashid S, Ameen M, Sundaram L, Hickey G, Cox AJ, Gao H, Kumar A, Aguet F et al. Identification of constrained sequence elements across 239 primate genomes. Nature. 2023 Nov 29;. DOI: 10.1038/s41586-023-06798-8; PMID: 38030727

Kuderna LFK, Gao H, Janiak MC, Kuhlwilm M, Orkin JD, Bataillon T, Manu S, Valenzuela A, Bergman J, Rousselle M et al. A global catalog of whole-genome diversity from 233 primate species. Science. 2023 Jun 2;380(6648):906-913. DOI: 10.1126/science.abn7829; PMID: 37262161

Zoonomia Consortium. A comparative genomics multitool for scientific discovery and conservation. Nature. 2020 Nov;587(7833):240-245. DOI: 10.1038/s41586-020-2876-6; PMID: 33177664; PMC: PMC7759459

Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 2020 Nov;587(7833):252-257. DOI: 10.1038/s41586-020-2873-9; PMID: 33177665; PMC: PMC7759463

Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J et al. Progressive Cactus is a multiple-genome aligner for the thousand-genome era. Nature. 2020 Nov;587(7833):246-251. DOI: 10.1038/s41586-020-2871-y; PMID: 33177663; PMC: PMC7673649