Assay Summary H2AFZ Summary Track Settings
 
Roadmap Epigenome H2AFZ Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF018TRZ_H9  ENCFF018TRZ H9 by ChIP-seq    Data format 
     ENCFF073ECF_neuron  ENCFF073ECF neuron by ChIP-seq    Data format 
     ENCFF157VMK_H1  ENCFF157VMK H1 by ChIP-seq    Data format 
     ENCFF190QOE_trophoblast_cell  ENCFF190QOE trophoblast_cell by ChIP-seq    Data format 
     ENCFF200IJZ_trophoblast_cell  ENCFF200IJZ trophoblast_cell by ChIP-seq    Data format 
     ENCFF204PTY_H1  ENCFF204PTY H1 by ChIP-seq    Data format 
     ENCFF209CHS_neuronal_stem_cell  ENCFF209CHS neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF231TXD_trophoblast_cell  ENCFF231TXD trophoblast_cell by ChIP-seq    Data format 
     ENCFF250AKU_mesenchymal_stem_cell  ENCFF250AKU mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF275USA_IMR-90  ENCFF275USA IMR-90 by ChIP-seq    Data format 
     ENCFF284TCY_trophoblast_cell  ENCFF284TCY trophoblast_cell by ChIP-seq    Data format 
     ENCFF312FNU_trophoblast_cell  ENCFF312FNU trophoblast_cell by ChIP-seq    Data format 
     ENCFF348GJQ_mesenchymal_stem_cell  ENCFF348GJQ mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF360BPO_H9  ENCFF360BPO H9 by ChIP-seq    Data format 
     ENCFF445UVT_H1  ENCFF445UVT H1 by ChIP-seq    Data format 
     ENCFF468IZJ_neuron  ENCFF468IZJ neuron by ChIP-seq    Data format 
     ENCFF477CHD_trophoblast_cell  ENCFF477CHD trophoblast_cell by ChIP-seq    Data format 
     ENCFF505JOL_IMR-90  ENCFF505JOL IMR-90 by ChIP-seq    Data format 
     ENCFF507TIA_neuronal_stem_cell  ENCFF507TIA neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF509VQI_H9  ENCFF509VQI H9 by ChIP-seq    Data format 
     ENCFF519VGB_H1  ENCFF519VGB H1 by ChIP-seq    Data format 
     ENCFF531GSL_trophoblast_cell  ENCFF531GSL trophoblast_cell by ChIP-seq    Data format 
     ENCFF575IJZ_IMR-90  ENCFF575IJZ IMR-90 by ChIP-seq    Data format 
     ENCFF583IGF_IMR-90  ENCFF583IGF IMR-90 by ChIP-seq    Data format 
     ENCFF588UZN_neuron  ENCFF588UZN neuron by ChIP-seq    Data format 
     ENCFF609KXB_trophoblast_cell  ENCFF609KXB trophoblast_cell by ChIP-seq    Data format 
     ENCFF702VNE_IMR-90  ENCFF702VNE IMR-90 by ChIP-seq    Data format 
     ENCFF720HLZ_IMR-90  ENCFF720HLZ IMR-90 by ChIP-seq    Data format 
     ENCFF732VFI_trophoblast_cell  ENCFF732VFI trophoblast_cell by ChIP-seq    Data format 
     ENCFF745VBR_trophoblast_cell  ENCFF745VBR trophoblast_cell by ChIP-seq    Data format 
     ENCFF777EIM_neuronal_stem_cell  ENCFF777EIM neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF780FNT_trophoblast_cell  ENCFF780FNT trophoblast_cell by ChIP-seq    Data format 
     ENCFF784ERJ_neuronal_stem_cell  ENCFF784ERJ neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF828FTZ_IMR-90  ENCFF828FTZ IMR-90 by ChIP-seq    Data format 
     ENCFF859KTR_IMR-90  ENCFF859KTR IMR-90 by ChIP-seq    Data format 
     ENCFF859PAP_IMR-90  ENCFF859PAP IMR-90 by ChIP-seq    Data format 
     ENCFF905MQV_IMR-90  ENCFF905MQV IMR-90 by ChIP-seq    Data format 
     ENCFF905SSM_H9  ENCFF905SSM H9 by ChIP-seq    Data format 
     ENCFF948KLN_neuron  ENCFF948KLN neuron by ChIP-seq    Data format 
     ENCFF974WUO_mesenchymal_stem_cell  ENCFF974WUO mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF984AUF_IMR-90  ENCFF984AUF IMR-90 by ChIP-seq    Data format 
     ENCFF987LAC_IMR-90  ENCFF987LAC IMR-90 by ChIP-seq    Data format 
     ENCFF992EIV_mesenchymal_stem_cell  ENCFF992EIV mesenchymal_stem_cell by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:IMR-90
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF