Assay Summary H2AK5ac Summary Track Settings
 
Roadmap Epigenome H2AK5ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF020FYG_mesendoderm  ENCFF020FYG mesendoderm by ChIP-seq    Data format 
     ENCFF050QBV_mesenchymal_stem_cell  ENCFF050QBV mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF067TZE_neuronal_stem_cell  ENCFF067TZE neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF077IJC_mesenchymal_stem_cell  ENCFF077IJC mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF085MCR_H9  ENCFF085MCR H9 by ChIP-seq    Data format 
     ENCFF088RFQ_H9  ENCFF088RFQ H9 by ChIP-seq    Data format 
     ENCFF089THI_trophoblast_cell  ENCFF089THI trophoblast_cell by ChIP-seq    Data format 
     ENCFF096ZYK_mesenchymal_stem_cell  ENCFF096ZYK mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF107NKE_mesendoderm  ENCFF107NKE mesendoderm by ChIP-seq    Data format 
     ENCFF113NZF_mesenchymal_stem_cell  ENCFF113NZF mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF120OSZ_IMR-90  ENCFF120OSZ IMR-90 by ChIP-seq    Data format 
     ENCFF129ROQ_H9  ENCFF129ROQ H9 by ChIP-seq    Data format 
     ENCFF142CYK_mesendoderm  ENCFF142CYK mesendoderm by ChIP-seq    Data format 
     ENCFF155HTT_IMR-90  ENCFF155HTT IMR-90 by ChIP-seq    Data format 
     ENCFF184TDH_trophoblast_cell  ENCFF184TDH trophoblast_cell by ChIP-seq    Data format 
     ENCFF195GFI_H1  ENCFF195GFI H1 by ChIP-seq    Data format 
     ENCFF248RJC_H9  ENCFF248RJC H9 by ChIP-seq    Data format 
     ENCFF249WWB_trophoblast_cell  ENCFF249WWB trophoblast_cell by ChIP-seq    Data format 
     ENCFF251XBN_trophoblast_cell  ENCFF251XBN trophoblast_cell by ChIP-seq    Data format 
     ENCFF279BVL_mesendoderm  ENCFF279BVL mesendoderm by ChIP-seq    Data format 
     ENCFF287KXH_H1  ENCFF287KXH H1 by ChIP-seq    Data format 
     ENCFF288MAC_IMR-90  ENCFF288MAC IMR-90 by ChIP-seq    Data format 
     ENCFF292DFI_mesendoderm  ENCFF292DFI mesendoderm by ChIP-seq    Data format 
     ENCFF296OPK_IMR-90  ENCFF296OPK IMR-90 by ChIP-seq    Data format 
     ENCFF329HEZ_IMR-90  ENCFF329HEZ IMR-90 by ChIP-seq    Data format 
     ENCFF360HCP_H1  ENCFF360HCP H1 by ChIP-seq    Data format 
     ENCFF364ADU_IMR-90  ENCFF364ADU IMR-90 by ChIP-seq    Data format 
     ENCFF374NLB_mesenchymal_stem_cell  ENCFF374NLB mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF377TFC_trophoblast_cell  ENCFF377TFC trophoblast_cell by ChIP-seq    Data format 
     ENCFF392BIV_H9  ENCFF392BIV H9 by ChIP-seq    Data format 
     ENCFF432HRU_H9  ENCFF432HRU H9 by ChIP-seq    Data format 
     ENCFF432MXN_H9  ENCFF432MXN H9 by ChIP-seq    Data format 
     ENCFF443FLN_IMR-90  ENCFF443FLN IMR-90 by ChIP-seq    Data format 
     ENCFF462XCS_H1  ENCFF462XCS H1 by ChIP-seq    Data format 
     ENCFF471JDZ_neuronal_stem_cell  ENCFF471JDZ neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF474VYI_H9  ENCFF474VYI H9 by ChIP-seq    Data format 
     ENCFF476BKI_mesenchymal_stem_cell  ENCFF476BKI mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF478OXE_mesendoderm  ENCFF478OXE mesendoderm by ChIP-seq    Data format 
     ENCFF508WLD_H1  ENCFF508WLD H1 by ChIP-seq    Data format 
     ENCFF517ZTV_mesendoderm  ENCFF517ZTV mesendoderm by ChIP-seq    Data format 
     ENCFF528DTG_mesendoderm  ENCFF528DTG mesendoderm by ChIP-seq    Data format 
     ENCFF531KYX_mesendoderm  ENCFF531KYX mesendoderm by ChIP-seq    Data format 
     ENCFF535YVH_neuronal_stem_cell  ENCFF535YVH neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF536YGE_trophoblast_cell  ENCFF536YGE trophoblast_cell by ChIP-seq    Data format 
     ENCFF548NLG_neuronal_stem_cell  ENCFF548NLG neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF549YBJ_H9  ENCFF549YBJ H9 by ChIP-seq    Data format 
     ENCFF585XYN_neuronal_stem_cell  ENCFF585XYN neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF587EFV_IMR-90  ENCFF587EFV IMR-90 by ChIP-seq    Data format 
     ENCFF587IDU_trophoblast_cell  ENCFF587IDU trophoblast_cell by ChIP-seq    Data format 
     ENCFF606WVM_neuronal_stem_cell  ENCFF606WVM neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF608PEZ_trophoblast_cell  ENCFF608PEZ trophoblast_cell by ChIP-seq    Data format 
     ENCFF648LGM_mesenchymal_stem_cell  ENCFF648LGM mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF655RYI_IMR-90  ENCFF655RYI IMR-90 by ChIP-seq    Data format 
     ENCFF696GUC_H1  ENCFF696GUC H1 by ChIP-seq    Data format 
     ENCFF714FHY_mesendoderm  ENCFF714FHY mesendoderm by ChIP-seq    Data format 
     ENCFF720PYW_mesenchymal_stem_cell  ENCFF720PYW mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF721XSD_H9  ENCFF721XSD H9 by ChIP-seq    Data format 
     ENCFF725DVT_neuronal_stem_cell  ENCFF725DVT neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF733GQB_IMR-90  ENCFF733GQB IMR-90 by ChIP-seq    Data format 
     ENCFF735WZI_mesenchymal_stem_cell  ENCFF735WZI mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF736GKF_mesendoderm  ENCFF736GKF mesendoderm by ChIP-seq    Data format 
     ENCFF742MTL_trophoblast_cell  ENCFF742MTL trophoblast_cell by ChIP-seq    Data format 
     ENCFF771GJE_H1  ENCFF771GJE H1 by ChIP-seq    Data format 
     ENCFF778ZFO_H9  ENCFF778ZFO H9 by ChIP-seq    Data format 
     ENCFF783IVG_H1  ENCFF783IVG H1 by ChIP-seq    Data format 
     ENCFF802JUP_mesendoderm  ENCFF802JUP mesendoderm by ChIP-seq    Data format 
     ENCFF816ZUZ_H1  ENCFF816ZUZ H1 by ChIP-seq    Data format 
     ENCFF820LLO_neuronal_stem_cell  ENCFF820LLO neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF825OIF_mesenchymal_stem_cell  ENCFF825OIF mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF830SCA_trophoblast_cell  ENCFF830SCA trophoblast_cell by ChIP-seq    Data format 
     ENCFF832VED_neuronal_stem_cell  ENCFF832VED neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF848ALN_trophoblast_cell  ENCFF848ALN trophoblast_cell by ChIP-seq    Data format 
     ENCFF865OHX_H1  ENCFF865OHX H1 by ChIP-seq    Data format 
     ENCFF871CMP_neuronal_stem_cell  ENCFF871CMP neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF882XBW_H1  ENCFF882XBW H1 by ChIP-seq    Data format 
     ENCFF886HVW_neuronal_stem_cell  ENCFF886HVW neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF906BVC_mesenchymal_stem_cell  ENCFF906BVC mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF909XHX_H1  ENCFF909XHX H1 by ChIP-seq    Data format 
     ENCFF947KTX_mesenchymal_stem_cell  ENCFF947KTX mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF954YBR_IMR-90  ENCFF954YBR IMR-90 by ChIP-seq    Data format 
     ENCFF975YFR_IMR-90  ENCFF975YFR IMR-90 by ChIP-seq    Data format 
     ENCFF977UPW_H9  ENCFF977UPW H9 by ChIP-seq    Data format 
     ENCFF982JIU_neuronal_stem_cell  ENCFF982JIU neuronal_stem_cell by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF