Assay Summary H2AK9ac Summary Track Settings
 
Roadmap Epigenome H2AK9ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF111BHR_IMR-90  ENCFF111BHR IMR-90 by ChIP-seq    Data format 
     ENCFF181MDU_IMR-90  ENCFF181MDU IMR-90 by ChIP-seq    Data format 
     ENCFF231HAP_IMR-90  ENCFF231HAP IMR-90 by ChIP-seq    Data format 
     ENCFF343QAU_IMR-90  ENCFF343QAU IMR-90 by ChIP-seq    Data format 
     ENCFF409VSF_IMR-90  ENCFF409VSF IMR-90 by ChIP-seq    Data format 
     ENCFF475YJV_IMR-90  ENCFF475YJV IMR-90 by ChIP-seq    Data format 
     ENCFF615GEG_IMR-90  ENCFF615GEG IMR-90 by ChIP-seq    Data format 
     ENCFF625ZJC_IMR-90  ENCFF625ZJC IMR-90 by ChIP-seq    Data format 
     ENCFF656BJE_IMR-90  ENCFF656BJE IMR-90 by ChIP-seq    Data format 
     ENCFF725IGL_IMR-90  ENCFF725IGL IMR-90 by ChIP-seq    Data format 
     ENCFF752AQC_IMR-90  ENCFF752AQC IMR-90 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:H9
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF