Assay Summary H2BK120ac Summary Track Settings
 
Roadmap Epigenome H2BK120ac Summary

Track collection: Assay Summary

+  Description
+  All tracks in this collection (37)

Display mode:       Reset to defaults

Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF007XTG_mesendoderm  ENCFF007XTG mesendoderm by ChIP-seq    Data format 
     ENCFF016JLS_IMR-90  ENCFF016JLS IMR-90 by ChIP-seq    Data format 
     ENCFF054YRU_mesendoderm  ENCFF054YRU mesendoderm by ChIP-seq    Data format 
     ENCFF071DPK_trophoblast_cell  ENCFF071DPK trophoblast_cell by ChIP-seq    Data format 
     ENCFF091KUA_mesendoderm  ENCFF091KUA mesendoderm by ChIP-seq    Data format 
     ENCFF092NYC_H1  ENCFF092NYC H1 by ChIP-seq    Data format 
     ENCFF093QTA_H9  ENCFF093QTA H9 by ChIP-seq    Data format 
     ENCFF117CJX_mesendoderm  ENCFF117CJX mesendoderm by ChIP-seq    Data format 
     ENCFF131KSV_IMR-90  ENCFF131KSV IMR-90 by ChIP-seq    Data format 
     ENCFF135KEQ_H1  ENCFF135KEQ H1 by ChIP-seq    Data format 
     ENCFF170ZCK_trophoblast_cell  ENCFF170ZCK trophoblast_cell by ChIP-seq    Data format 
     ENCFF172QQF_mesendoderm  ENCFF172QQF mesendoderm by ChIP-seq    Data format 
     ENCFF177JZQ_neuronal_stem_cell  ENCFF177JZQ neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF194TPO_H1  ENCFF194TPO H1 by ChIP-seq    Data format 
     ENCFF211TVQ_H1  ENCFF211TVQ H1 by ChIP-seq    Data format 
     ENCFF228WDG_IMR-90  ENCFF228WDG IMR-90 by ChIP-seq    Data format 
     ENCFF252NWZ_mesendoderm  ENCFF252NWZ mesendoderm by ChIP-seq    Data format 
     ENCFF295YEV_IMR-90  ENCFF295YEV IMR-90 by ChIP-seq    Data format 
     ENCFF304XLK_IMR-90  ENCFF304XLK IMR-90 by ChIP-seq    Data format 
     ENCFF309ZYD_H9  ENCFF309ZYD H9 by ChIP-seq    Data format 
     ENCFF315GCJ_neuronal_stem_cell  ENCFF315GCJ neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF338VZQ_mesendoderm  ENCFF338VZQ mesendoderm by ChIP-seq    Data format 
     ENCFF353SHH_neuronal_stem_cell  ENCFF353SHH neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF364BOX_neuronal_stem_cell  ENCFF364BOX neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF367GEY_neuronal_stem_cell  ENCFF367GEY neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF373TXQ_trophoblast_cell  ENCFF373TXQ trophoblast_cell by ChIP-seq    Data format 
     ENCFF375RXW_trophoblast_cell  ENCFF375RXW trophoblast_cell by ChIP-seq    Data format 
     ENCFF418FJA_mesenchymal_stem_cell  ENCFF418FJA mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF434ZAJ_IMR-90  ENCFF434ZAJ IMR-90 by ChIP-seq    Data format 
     ENCFF437RRN_trophoblast_cell  ENCFF437RRN trophoblast_cell by ChIP-seq    Data format 
     ENCFF449RUF_H1  ENCFF449RUF H1 by ChIP-seq    Data format 
     ENCFF462MUY_mesendoderm  ENCFF462MUY mesendoderm by ChIP-seq    Data format 
     ENCFF486BJL_mesenchymal_stem_cell  ENCFF486BJL mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF488YSN_mesenchymal_stem_cell  ENCFF488YSN mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF496RZQ_neuronal_stem_cell  ENCFF496RZQ neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF498NTH_trophoblast_cell  ENCFF498NTH trophoblast_cell by ChIP-seq    Data format 
     ENCFF518EXV_H1  ENCFF518EXV H1 by ChIP-seq    Data format 
     ENCFF537NKE_mesendoderm  ENCFF537NKE mesendoderm by ChIP-seq    Data format 
     ENCFF543LNR_trophoblast_cell  ENCFF543LNR trophoblast_cell by ChIP-seq    Data format 
     ENCFF555WFF_neuronal_stem_cell  ENCFF555WFF neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF566MJE_trophoblast_cell  ENCFF566MJE trophoblast_cell by ChIP-seq    Data format 
     ENCFF569BBM_H9  ENCFF569BBM H9 by ChIP-seq    Data format 
     ENCFF576SPS_IMR-90  ENCFF576SPS IMR-90 by ChIP-seq    Data format 
     ENCFF577LCU_IMR-90  ENCFF577LCU IMR-90 by ChIP-seq    Data format 
     ENCFF612JTH_neuronal_stem_cell  ENCFF612JTH neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF615BYJ_trophoblast_cell  ENCFF615BYJ trophoblast_cell by ChIP-seq    Data format 
     ENCFF617BHO_H1  ENCFF617BHO H1 by ChIP-seq    Data format 
     ENCFF646OIF_H1  ENCFF646OIF H1 by ChIP-seq    Data format 
     ENCFF664CPH_neuronal_stem_cell  ENCFF664CPH neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF664PDL_H1  ENCFF664PDL H1 by ChIP-seq    Data format 
     ENCFF664YDU_mesendoderm  ENCFF664YDU mesendoderm by ChIP-seq    Data format 
     ENCFF700LTX_trophoblast_cell  ENCFF700LTX trophoblast_cell by ChIP-seq    Data format 
     ENCFF724BPP_IMR-90  ENCFF724BPP IMR-90 by ChIP-seq    Data format 
     ENCFF733CNW_neuronal_stem_cell  ENCFF733CNW neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF733YSQ_mesendoderm  ENCFF733YSQ mesendoderm by ChIP-seq    Data format 
     ENCFF734XUW_neuronal_stem_cell  ENCFF734XUW neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF743BTT_H1  ENCFF743BTT H1 by ChIP-seq    Data format 
     ENCFF757EYT_H1  ENCFF757EYT H1 by ChIP-seq    Data format 
     ENCFF761TIG_trophoblast_cell  ENCFF761TIG trophoblast_cell by ChIP-seq    Data format 
     ENCFF806TLA_mesendoderm  ENCFF806TLA mesendoderm by ChIP-seq    Data format 
     ENCFF811FXD_IMR-90  ENCFF811FXD IMR-90 by ChIP-seq    Data format 
     ENCFF846PVA_mesenchymal_stem_cell  ENCFF846PVA mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF897KMX_IMR-90  ENCFF897KMX IMR-90 by ChIP-seq    Data format 
     ENCFF911FJN_H1  ENCFF911FJN H1 by ChIP-seq    Data format 
     ENCFF950RAD_neuronal_stem_cell  ENCFF950RAD neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF985LAW_H9  ENCFF985LAW H9 by ChIP-seq    Data format 
     ENCFF987LMU_IMR-90  ENCFF987LMU IMR-90 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:H9
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF