Assay Summary H2BK12ac Summary Track Settings
 
Roadmap Epigenome H2BK12ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF038BSL_neuronal_stem_cell  ENCFF038BSL neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF065LIA_H1  ENCFF065LIA H1 by ChIP-seq    Data format 
     ENCFF075FJV_neuronal_stem_cell  ENCFF075FJV neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF080CWG_H9  ENCFF080CWG H9 by ChIP-seq    Data format 
     ENCFF084LBO_IMR-90  ENCFF084LBO IMR-90 by ChIP-seq    Data format 
     ENCFF104RQA_neuronal_stem_cell  ENCFF104RQA neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF111JQJ_H1  ENCFF111JQJ H1 by ChIP-seq    Data format 
     ENCFF161HPU_trophoblast_cell  ENCFF161HPU trophoblast_cell by ChIP-seq    Data format 
     ENCFF176WTT_mesenchymal_stem_cell  ENCFF176WTT mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF213VCW_IMR-90  ENCFF213VCW IMR-90 by ChIP-seq    Data format 
     ENCFF251NCA_H9  ENCFF251NCA H9 by ChIP-seq    Data format 
     ENCFF271DJW_mesenchymal_stem_cell  ENCFF271DJW mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF282ZZI_IMR-90  ENCFF282ZZI IMR-90 by ChIP-seq    Data format 
     ENCFF312WJU_trophoblast_cell  ENCFF312WJU trophoblast_cell by ChIP-seq    Data format 
     ENCFF321KXW_mesenchymal_stem_cell  ENCFF321KXW mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF335ZTY_trophoblast_cell  ENCFF335ZTY trophoblast_cell by ChIP-seq    Data format 
     ENCFF342ILQ_H1  ENCFF342ILQ H1 by ChIP-seq    Data format 
     ENCFF346OEM_trophoblast_cell  ENCFF346OEM trophoblast_cell by ChIP-seq    Data format 
     ENCFF374SUU_mesenchymal_stem_cell  ENCFF374SUU mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF380MWK_IMR-90  ENCFF380MWK IMR-90 by ChIP-seq    Data format 
     ENCFF385VXK_H1  ENCFF385VXK H1 by ChIP-seq    Data format 
     ENCFF407AXY_H1  ENCFF407AXY H1 by ChIP-seq    Data format 
     ENCFF424OCT_mesenchymal_stem_cell  ENCFF424OCT mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF480GFU_H9  ENCFF480GFU H9 by ChIP-seq    Data format 
     ENCFF481LIZ_H9  ENCFF481LIZ H9 by ChIP-seq    Data format 
     ENCFF483UAT_IMR-90  ENCFF483UAT IMR-90 by ChIP-seq    Data format 
     ENCFF506ELR_H9  ENCFF506ELR H9 by ChIP-seq    Data format 
     ENCFF522VXM_IMR-90  ENCFF522VXM IMR-90 by ChIP-seq    Data format 
     ENCFF536XVS_IMR-90  ENCFF536XVS IMR-90 by ChIP-seq    Data format 
     ENCFF553QFQ_mesenchymal_stem_cell  ENCFF553QFQ mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF569QVE_neuronal_stem_cell  ENCFF569QVE neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF595HFB_IMR-90  ENCFF595HFB IMR-90 by ChIP-seq    Data format 
     ENCFF624YBF_mesenchymal_stem_cell  ENCFF624YBF mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF645SWI_H9  ENCFF645SWI H9 by ChIP-seq    Data format 
     ENCFF684XWV_H1  ENCFF684XWV H1 by ChIP-seq    Data format 
     ENCFF698CYN_H1  ENCFF698CYN H1 by ChIP-seq    Data format 
     ENCFF718OHY_H9  ENCFF718OHY H9 by ChIP-seq    Data format 
     ENCFF724QZZ_H1  ENCFF724QZZ H1 by ChIP-seq    Data format 
     ENCFF728QLQ_H1  ENCFF728QLQ H1 by ChIP-seq    Data format 
     ENCFF743GIR_trophoblast_cell  ENCFF743GIR trophoblast_cell by ChIP-seq    Data format 
     ENCFF763VHL_trophoblast_cell  ENCFF763VHL trophoblast_cell by ChIP-seq    Data format 
     ENCFF767XSG_H9  ENCFF767XSG H9 by ChIP-seq    Data format 
     ENCFF788HBU_H9  ENCFF788HBU H9 by ChIP-seq    Data format 
     ENCFF801TKC_trophoblast_cell  ENCFF801TKC trophoblast_cell by ChIP-seq    Data format 
     ENCFF805THH_mesenchymal_stem_cell  ENCFF805THH mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF813UXM_H9  ENCFF813UXM H9 by ChIP-seq    Data format 
     ENCFF814YVY_trophoblast_cell  ENCFF814YVY trophoblast_cell by ChIP-seq    Data format 
     ENCFF857VJE_IMR-90  ENCFF857VJE IMR-90 by ChIP-seq    Data format 
     ENCFF859AXB_H9  ENCFF859AXB H9 by ChIP-seq    Data format 
     ENCFF870XFG_IMR-90  ENCFF870XFG IMR-90 by ChIP-seq    Data format 
     ENCFF873OYG_H1  ENCFF873OYG H1 by ChIP-seq    Data format 
     ENCFF875QEB_H1  ENCFF875QEB H1 by ChIP-seq    Data format 
     ENCFF881TPS_H9  ENCFF881TPS H9 by ChIP-seq    Data format 
     ENCFF896KVV_trophoblast_cell  ENCFF896KVV trophoblast_cell by ChIP-seq    Data format 
     ENCFF902CLH_trophoblast_cell  ENCFF902CLH trophoblast_cell by ChIP-seq    Data format 
     ENCFF910LQL_IMR-90  ENCFF910LQL IMR-90 by ChIP-seq    Data format 
     ENCFF927CGZ_trophoblast_cell  ENCFF927CGZ trophoblast_cell by ChIP-seq    Data format 
     ENCFF949KSH_H1  ENCFF949KSH H1 by ChIP-seq    Data format 
     ENCFF974ORS_IMR-90  ENCFF974ORS IMR-90 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:mesendoderm
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF