Assay Summary H2BK20ac Summary Track Settings
 
Roadmap Epigenome H2BK20ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF033HCX_H1  ENCFF033HCX H1 by ChIP-seq    Data format 
     ENCFF071UAM_H1  ENCFF071UAM H1 by ChIP-seq    Data format 
     ENCFF124JBY_H1  ENCFF124JBY H1 by ChIP-seq    Data format 
     ENCFF217JTN_IMR-90  ENCFF217JTN IMR-90 by ChIP-seq    Data format 
     ENCFF229GFP_H9  ENCFF229GFP H9 by ChIP-seq    Data format 
     ENCFF230IZN_H1  ENCFF230IZN H1 by ChIP-seq    Data format 
     ENCFF250ZWC_H1  ENCFF250ZWC H1 by ChIP-seq    Data format 
     ENCFF276BOJ_IMR-90  ENCFF276BOJ IMR-90 by ChIP-seq    Data format 
     ENCFF297TKC_H9  ENCFF297TKC H9 by ChIP-seq    Data format 
     ENCFF333JQR_IMR-90  ENCFF333JQR IMR-90 by ChIP-seq    Data format 
     ENCFF345WYC_IMR-90  ENCFF345WYC IMR-90 by ChIP-seq    Data format 
     ENCFF382GFP_H1  ENCFF382GFP H1 by ChIP-seq    Data format 
     ENCFF428SCC_IMR-90  ENCFF428SCC IMR-90 by ChIP-seq    Data format 
     ENCFF438QUI_IMR-90  ENCFF438QUI IMR-90 by ChIP-seq    Data format 
     ENCFF448DOY_H1  ENCFF448DOY H1 by ChIP-seq    Data format 
     ENCFF545KMZ_H9  ENCFF545KMZ H9 by ChIP-seq    Data format 
     ENCFF548DAY_H1  ENCFF548DAY H1 by ChIP-seq    Data format 
     ENCFF557GDJ_H9  ENCFF557GDJ H9 by ChIP-seq    Data format 
     ENCFF575ZQY_IMR-90  ENCFF575ZQY IMR-90 by ChIP-seq    Data format 
     ENCFF586JJP_IMR-90  ENCFF586JJP IMR-90 by ChIP-seq    Data format 
     ENCFF592YSB_H1  ENCFF592YSB H1 by ChIP-seq    Data format 
     ENCFF648IMS_IMR-90  ENCFF648IMS IMR-90 by ChIP-seq    Data format 
     ENCFF826AWR_IMR-90  ENCFF826AWR IMR-90 by ChIP-seq    Data format 
     ENCFF863ECH_H1  ENCFF863ECH H1 by ChIP-seq    Data format 
     ENCFF864KKV_H1  ENCFF864KKV H1 by ChIP-seq    Data format 
     ENCFF956BKB_IMR-90  ENCFF956BKB IMR-90 by ChIP-seq    Data format 
     ENCFF968MBB_H1  ENCFF968MBB H1 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:mesendoderm
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF