Assay Summary H2BK5ac Summary Track Settings
 
Roadmap Epigenome H2BK5ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF007KYA_H1  ENCFF007KYA H1 by ChIP-seq    Data format 
     ENCFF007YRT_IMR-90  ENCFF007YRT IMR-90 by ChIP-seq    Data format 
     ENCFF035FZJ_mesendoderm  ENCFF035FZJ mesendoderm by ChIP-seq    Data format 
     ENCFF037OQS_mesendoderm  ENCFF037OQS mesendoderm by ChIP-seq    Data format 
     ENCFF045DZK_H9  ENCFF045DZK H9 by ChIP-seq    Data format 
     ENCFF054OGC_IMR-90  ENCFF054OGC IMR-90 by ChIP-seq    Data format 
     ENCFF066UGT_trophoblast_cell  ENCFF066UGT trophoblast_cell by ChIP-seq    Data format 
     ENCFF078GLA_mesenchymal_stem_cell  ENCFF078GLA mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF088KSQ_trophoblast_cell  ENCFF088KSQ trophoblast_cell by ChIP-seq    Data format 
     ENCFF096IDH_mesendoderm  ENCFF096IDH mesendoderm by ChIP-seq    Data format 
     ENCFF097BTA_mesendoderm  ENCFF097BTA mesendoderm by ChIP-seq    Data format 
     ENCFF100UUG_trophoblast_cell  ENCFF100UUG trophoblast_cell by ChIP-seq    Data format 
     ENCFF118NDT_mesenchymal_stem_cell  ENCFF118NDT mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF122SMR_IMR-90  ENCFF122SMR IMR-90 by ChIP-seq    Data format 
     ENCFF138LDI_mesendoderm  ENCFF138LDI mesendoderm by ChIP-seq    Data format 
     ENCFF146WAI_H1  ENCFF146WAI H1 by ChIP-seq    Data format 
     ENCFF179DYB_H1  ENCFF179DYB H1 by ChIP-seq    Data format 
     ENCFF186RDZ_H9  ENCFF186RDZ H9 by ChIP-seq    Data format 
     ENCFF188YZG_trophoblast_cell  ENCFF188YZG trophoblast_cell by ChIP-seq    Data format 
     ENCFF193CNG_mesendoderm  ENCFF193CNG mesendoderm by ChIP-seq    Data format 
     ENCFF194VUT_trophoblast_cell  ENCFF194VUT trophoblast_cell by ChIP-seq    Data format 
     ENCFF198GRB_trophoblast_cell  ENCFF198GRB trophoblast_cell by ChIP-seq    Data format 
     ENCFF199BKT_H9  ENCFF199BKT H9 by ChIP-seq    Data format 
     ENCFF220RZL_H9  ENCFF220RZL H9 by ChIP-seq    Data format 
     ENCFF248GEZ_trophoblast_cell  ENCFF248GEZ trophoblast_cell by ChIP-seq    Data format 
     ENCFF248IAA_trophoblast_cell  ENCFF248IAA trophoblast_cell by ChIP-seq    Data format 
     ENCFF307QXL_mesenchymal_stem_cell  ENCFF307QXL mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF310FJT_trophoblast_cell  ENCFF310FJT trophoblast_cell by ChIP-seq    Data format 
     ENCFF318UYV_H1  ENCFF318UYV H1 by ChIP-seq    Data format 
     ENCFF343ZZS_IMR-90  ENCFF343ZZS IMR-90 by ChIP-seq    Data format 
     ENCFF345HFH_H9  ENCFF345HFH H9 by ChIP-seq    Data format 
     ENCFF350UPI_H9  ENCFF350UPI H9 by ChIP-seq    Data format 
     ENCFF356ZUR_H1  ENCFF356ZUR H1 by ChIP-seq    Data format 
     ENCFF389UIR_H1  ENCFF389UIR H1 by ChIP-seq    Data format 
     ENCFF390RBD_mesendoderm  ENCFF390RBD mesendoderm by ChIP-seq    Data format 
     ENCFF393BCR_mesenchymal_stem_cell  ENCFF393BCR mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF406VVR_IMR-90  ENCFF406VVR IMR-90 by ChIP-seq    Data format 
     ENCFF411OPM_H1  ENCFF411OPM H1 by ChIP-seq    Data format 
     ENCFF440TLI_mesendoderm  ENCFF440TLI mesendoderm by ChIP-seq    Data format 
     ENCFF451CYN_H1  ENCFF451CYN H1 by ChIP-seq    Data format 
     ENCFF455HXE_H9  ENCFF455HXE H9 by ChIP-seq    Data format 
     ENCFF455NOQ_IMR-90  ENCFF455NOQ IMR-90 by ChIP-seq    Data format 
     ENCFF460AHA_H9  ENCFF460AHA H9 by ChIP-seq    Data format 
     ENCFF483PUQ_mesenchymal_stem_cell  ENCFF483PUQ mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF487RMW_neuronal_stem_cell  ENCFF487RMW neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF490YOS_IMR-90  ENCFF490YOS IMR-90 by ChIP-seq    Data format 
     ENCFF513DXL_IMR-90  ENCFF513DXL IMR-90 by ChIP-seq    Data format 
     ENCFF533PKF_H9  ENCFF533PKF H9 by ChIP-seq    Data format 
     ENCFF540JEJ_H9  ENCFF540JEJ H9 by ChIP-seq    Data format 
     ENCFF556TJT_trophoblast_cell  ENCFF556TJT trophoblast_cell by ChIP-seq    Data format 
     ENCFF568XYS_H9  ENCFF568XYS H9 by ChIP-seq    Data format 
     ENCFF660INF_mesendoderm  ENCFF660INF mesendoderm by ChIP-seq    Data format 
     ENCFF673HMJ_H1  ENCFF673HMJ H1 by ChIP-seq    Data format 
     ENCFF681QES_mesenchymal_stem_cell  ENCFF681QES mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF692LJR_H1  ENCFF692LJR H1 by ChIP-seq    Data format 
     ENCFF706UTY_IMR-90  ENCFF706UTY IMR-90 by ChIP-seq    Data format 
     ENCFF713BNJ_mesenchymal_stem_cell  ENCFF713BNJ mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF744CML_IMR-90  ENCFF744CML IMR-90 by ChIP-seq    Data format 
     ENCFF777NHH_IMR-90  ENCFF777NHH IMR-90 by ChIP-seq    Data format 
     ENCFF803QKI_H1  ENCFF803QKI H1 by ChIP-seq    Data format 
     ENCFF810TUO_mesendoderm  ENCFF810TUO mesendoderm by ChIP-seq    Data format 
     ENCFF821BLF_mesendoderm  ENCFF821BLF mesendoderm by ChIP-seq    Data format 
     ENCFF836XOA_neuronal_stem_cell  ENCFF836XOA neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF837UHE_neuronal_stem_cell  ENCFF837UHE neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF862MJM_mesenchymal_stem_cell  ENCFF862MJM mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF889GET_IMR-90  ENCFF889GET IMR-90 by ChIP-seq    Data format 
     ENCFF891OIS_H1  ENCFF891OIS H1 by ChIP-seq    Data format 
     ENCFF899CTS_mesenchymal_stem_cell  ENCFF899CTS mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF904ZGJ_trophoblast_cell  ENCFF904ZGJ trophoblast_cell by ChIP-seq    Data format 
     ENCFF921VMW_mesenchymal_stem_cell  ENCFF921VMW mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF940PXN_mesenchymal_stem_cell  ENCFF940PXN mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF959ING_mesenchymal_stem_cell  ENCFF959ING mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF970HXE_mesendoderm  ENCFF970HXE mesendoderm by ChIP-seq    Data format 
     ENCFF986JQW_H9  ENCFF986JQW H9 by ChIP-seq    Data format 
     ENCFF996YGT_neuronal_stem_cell  ENCFF996YGT neuronal_stem_cell by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF