Assay Summary H3K23ac Summary Track Settings
 
Roadmap Epigenome H3K23ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF015NOK_IMR-90  ENCFF015NOK IMR-90 by ChIP-seq    Data format 
     ENCFF024CHN_neuronal_stem_cell  ENCFF024CHN neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF074ALC_IMR-90  ENCFF074ALC IMR-90 by ChIP-seq    Data format 
     ENCFF096QYY_mesenchymal_stem_cell  ENCFF096QYY mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF124DRW_mesenchymal_stem_cell  ENCFF124DRW mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF124MQH_IMR-90  ENCFF124MQH IMR-90 by ChIP-seq    Data format 
     ENCFF189JLT_IMR-90  ENCFF189JLT IMR-90 by ChIP-seq    Data format 
     ENCFF202QII_mesenchymal_stem_cell  ENCFF202QII mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF202TPC_neuronal_stem_cell  ENCFF202TPC neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF206EOO_trophoblast_cell  ENCFF206EOO trophoblast_cell by ChIP-seq    Data format 
     ENCFF208AUH_H1  ENCFF208AUH H1 by ChIP-seq    Data format 
     ENCFF209ROI_mesenchymal_stem_cell  ENCFF209ROI mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF209WPF_H9  ENCFF209WPF H9 by ChIP-seq    Data format 
     ENCFF220WTI_H9  ENCFF220WTI H9 by ChIP-seq    Data format 
     ENCFF222DOT_IMR-90  ENCFF222DOT IMR-90 by ChIP-seq    Data format 
     ENCFF252QRJ_IMR-90  ENCFF252QRJ IMR-90 by ChIP-seq    Data format 
     ENCFF258KZP_H1  ENCFF258KZP H1 by ChIP-seq    Data format 
     ENCFF269ROA_neuronal_stem_cell  ENCFF269ROA neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF270BHF_mesenchymal_stem_cell  ENCFF270BHF mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF288FXM_H1  ENCFF288FXM H1 by ChIP-seq    Data format 
     ENCFF301NKM_IMR-90  ENCFF301NKM IMR-90 by ChIP-seq    Data format 
     ENCFF308CZG_H9  ENCFF308CZG H9 by ChIP-seq    Data format 
     ENCFF311AMD_trophoblast_cell  ENCFF311AMD trophoblast_cell by ChIP-seq    Data format 
     ENCFF349GEK_H9  ENCFF349GEK H9 by ChIP-seq    Data format 
     ENCFF356IQK_mesendoderm  ENCFF356IQK mesendoderm by ChIP-seq    Data format 
     ENCFF380FEI_neuronal_stem_cell  ENCFF380FEI neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF380ZOR_mesendoderm  ENCFF380ZOR mesendoderm by ChIP-seq    Data format 
     ENCFF381JSD_H9  ENCFF381JSD H9 by ChIP-seq    Data format 
     ENCFF384FFI_trophoblast_cell  ENCFF384FFI trophoblast_cell by ChIP-seq    Data format 
     ENCFF419LKB_mesenchymal_stem_cell  ENCFF419LKB mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF421QZQ_neuronal_stem_cell  ENCFF421QZQ neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF461ICR_H1  ENCFF461ICR H1 by ChIP-seq    Data format 
     ENCFF464QEO_H1  ENCFF464QEO H1 by ChIP-seq    Data format 
     ENCFF478SCP_H1  ENCFF478SCP H1 by ChIP-seq    Data format 
     ENCFF487FRR_H9  ENCFF487FRR H9 by ChIP-seq    Data format 
     ENCFF516CQE_H9  ENCFF516CQE H9 by ChIP-seq    Data format 
     ENCFF521TLB_H9  ENCFF521TLB H9 by ChIP-seq    Data format 
     ENCFF521XCS_H9  ENCFF521XCS H9 by ChIP-seq    Data format 
     ENCFF525YNS_H1  ENCFF525YNS H1 by ChIP-seq    Data format 
     ENCFF586FLZ_H1  ENCFF586FLZ H1 by ChIP-seq    Data format 
     ENCFF588IAJ_mesendoderm  ENCFF588IAJ mesendoderm by ChIP-seq    Data format 
     ENCFF603LKE_trophoblast_cell  ENCFF603LKE trophoblast_cell by ChIP-seq    Data format 
     ENCFF622TZH_trophoblast_cell  ENCFF622TZH trophoblast_cell by ChIP-seq    Data format 
     ENCFF627HFP_trophoblast_cell  ENCFF627HFP trophoblast_cell by ChIP-seq    Data format 
     ENCFF646APT_mesendoderm  ENCFF646APT mesendoderm by ChIP-seq    Data format 
     ENCFF674LYX_trophoblast_cell  ENCFF674LYX trophoblast_cell by ChIP-seq    Data format 
     ENCFF688LGR_H9  ENCFF688LGR H9 by ChIP-seq    Data format 
     ENCFF710SSB_H1  ENCFF710SSB H1 by ChIP-seq    Data format 
     ENCFF730DGP_mesenchymal_stem_cell  ENCFF730DGP mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF739SJR_trophoblast_cell  ENCFF739SJR trophoblast_cell by ChIP-seq    Data format 
     ENCFF743VOI_neuronal_stem_cell  ENCFF743VOI neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF748IGO_neuronal_stem_cell  ENCFF748IGO neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF748PYJ_trophoblast_cell  ENCFF748PYJ trophoblast_cell by ChIP-seq    Data format 
     ENCFF763JEZ_neuronal_stem_cell  ENCFF763JEZ neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF795AJO_IMR-90  ENCFF795AJO IMR-90 by ChIP-seq    Data format 
     ENCFF796CLG_IMR-90  ENCFF796CLG IMR-90 by ChIP-seq    Data format 
     ENCFF803CNI_mesenchymal_stem_cell  ENCFF803CNI mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF806FIZ_H9  ENCFF806FIZ H9 by ChIP-seq    Data format 
     ENCFF813OCV_trophoblast_cell  ENCFF813OCV trophoblast_cell by ChIP-seq    Data format 
     ENCFF843OJE_neuronal_stem_cell  ENCFF843OJE neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF868JIG_neuronal_stem_cell  ENCFF868JIG neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF873YOP_IMR-90  ENCFF873YOP IMR-90 by ChIP-seq    Data format 
     ENCFF876OKK_H1  ENCFF876OKK H1 by ChIP-seq    Data format 
     ENCFF893TCT_trophoblast_cell  ENCFF893TCT trophoblast_cell by ChIP-seq    Data format 
     ENCFF899VOW_IMR-90  ENCFF899VOW IMR-90 by ChIP-seq    Data format 
     ENCFF904OAU_H1  ENCFF904OAU H1 by ChIP-seq    Data format 
     ENCFF947TEU_H1  ENCFF947TEU H1 by ChIP-seq    Data format 
     ENCFF954OIV_H9  ENCFF954OIV H9 by ChIP-seq    Data format 
     ENCFF955KIK_neuronal_stem_cell  ENCFF955KIK neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF974RCH_neuronal_stem_cell  ENCFF974RCH neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF989KCQ_IMR-90  ENCFF989KCQ IMR-90 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF