Assay Summary H3K23me2 Summary Track Settings
 
Roadmap Epigenome H3K23me2 Summary

Track collection: Assay Summary

+  Description
+  All tracks in this collection (37)

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Overlay method:
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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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     ENCFF060UVU_H9  ENCFF060UVU H9 by ChIP-seq    Data format 
     ENCFF074ALX_H1  ENCFF074ALX H1 by ChIP-seq    Data format 
     ENCFF086DCT_H1  ENCFF086DCT H1 by ChIP-seq    Data format 
     ENCFF153WID_H9  ENCFF153WID H9 by ChIP-seq    Data format 
     ENCFF168XEY_H9  ENCFF168XEY H9 by ChIP-seq    Data format 
     ENCFF224BGI_H1  ENCFF224BGI H1 by ChIP-seq    Data format 
     ENCFF325LPL_H9  ENCFF325LPL H9 by ChIP-seq    Data format 
     ENCFF334EAB_H9  ENCFF334EAB H9 by ChIP-seq    Data format 
     ENCFF345ZQL_H1  ENCFF345ZQL H1 by ChIP-seq    Data format 
     ENCFF439KXH_H9  ENCFF439KXH H9 by ChIP-seq    Data format 
     ENCFF454BHB_H9  ENCFF454BHB H9 by ChIP-seq    Data format 
     ENCFF490YFM_H1  ENCFF490YFM H1 by ChIP-seq    Data format 
     ENCFF493ISW_H1  ENCFF493ISW H1 by ChIP-seq    Data format 
     ENCFF517UOA_H1  ENCFF517UOA H1 by ChIP-seq    Data format 
     ENCFF520LWC_H9  ENCFF520LWC H9 by ChIP-seq    Data format 
     ENCFF541FMI_H1  ENCFF541FMI H1 by ChIP-seq    Data format 
     ENCFF545OCH_H1  ENCFF545OCH H1 by ChIP-seq    Data format 
     ENCFF577BBD_H1  ENCFF577BBD H1 by ChIP-seq    Data format 
     ENCFF670CWD_H9  ENCFF670CWD H9 by ChIP-seq    Data format 
     ENCFF712WRV_H9  ENCFF712WRV H9 by ChIP-seq    Data format 
     ENCFF757RMF_H1  ENCFF757RMF H1 by ChIP-seq    Data format 
     ENCFF972LLR_H1  ENCFF972LLR H1 by ChIP-seq    Data format 
     ENCFF974OPT_H9  ENCFF974OPT H9 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF