Assay Summary H3K4ac Summary Track Settings
 
Roadmap Epigenome H3K4ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF033UTA_mesendoderm  ENCFF033UTA mesendoderm by ChIP-seq    Data format 
     ENCFF057DPN_H9  ENCFF057DPN H9 by ChIP-seq    Data format 
     ENCFF072IQF_neuronal_stem_cell  ENCFF072IQF neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF072LWV_H1  ENCFF072LWV H1 by ChIP-seq    Data format 
     ENCFF081VTF_mesenchymal_stem_cell  ENCFF081VTF mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF089YMA_neuronal_stem_cell  ENCFF089YMA neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF094VIB_trophoblast_cell  ENCFF094VIB trophoblast_cell by ChIP-seq    Data format 
     ENCFF108NIG_IMR-90  ENCFF108NIG IMR-90 by ChIP-seq    Data format 
     ENCFF113UHC_trophoblast_cell  ENCFF113UHC trophoblast_cell by ChIP-seq    Data format 
     ENCFF144YJM_H9  ENCFF144YJM H9 by ChIP-seq    Data format 
     ENCFF145GZW_neuronal_stem_cell  ENCFF145GZW neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF153ULT_trophoblast_cell  ENCFF153ULT trophoblast_cell by ChIP-seq    Data format 
     ENCFF158BGC_H1  ENCFF158BGC H1 by ChIP-seq    Data format 
     ENCFF160VWT_H1  ENCFF160VWT H1 by ChIP-seq    Data format 
     ENCFF174UQH_mesenchymal_stem_cell  ENCFF174UQH mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF176INM_H1  ENCFF176INM H1 by ChIP-seq    Data format 
     ENCFF178PRN_IMR-90  ENCFF178PRN IMR-90 by ChIP-seq    Data format 
     ENCFF183DXB_H1  ENCFF183DXB H1 by ChIP-seq    Data format 
     ENCFF187MMM_neuronal_stem_cell  ENCFF187MMM neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF189XCJ_IMR-90  ENCFF189XCJ IMR-90 by ChIP-seq    Data format 
     ENCFF234RIC_neuronal_stem_cell  ENCFF234RIC neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF242UWZ_trophoblast_cell  ENCFF242UWZ trophoblast_cell by ChIP-seq    Data format 
     ENCFF291GFD_H1  ENCFF291GFD H1 by ChIP-seq    Data format 
     ENCFF297UVM_mesenchymal_stem_cell  ENCFF297UVM mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF298WGR_mesenchymal_stem_cell  ENCFF298WGR mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF356QHS_neuronal_stem_cell  ENCFF356QHS neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF362HMI_H9  ENCFF362HMI H9 by ChIP-seq    Data format 
     ENCFF374IWY_H1  ENCFF374IWY H1 by ChIP-seq    Data format 
     ENCFF380UJC_neuronal_stem_cell  ENCFF380UJC neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF382QFM_H1  ENCFF382QFM H1 by ChIP-seq    Data format 
     ENCFF390VRQ_IMR-90  ENCFF390VRQ IMR-90 by ChIP-seq    Data format 
     ENCFF411RET_IMR-90  ENCFF411RET IMR-90 by ChIP-seq    Data format 
     ENCFF413OXA_IMR-90  ENCFF413OXA IMR-90 by ChIP-seq    Data format 
     ENCFF433HZC_neuronal_stem_cell  ENCFF433HZC neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF445IYK_mesendoderm  ENCFF445IYK mesendoderm by ChIP-seq    Data format 
     ENCFF458AQK_IMR-90  ENCFF458AQK IMR-90 by ChIP-seq    Data format 
     ENCFF472WGM_H9  ENCFF472WGM H9 by ChIP-seq    Data format 
     ENCFF534CMH_H9  ENCFF534CMH H9 by ChIP-seq    Data format 
     ENCFF538ADF_mesendoderm  ENCFF538ADF mesendoderm by ChIP-seq    Data format 
     ENCFF542IUH_H9  ENCFF542IUH H9 by ChIP-seq    Data format 
     ENCFF547FZL_IMR-90  ENCFF547FZL IMR-90 by ChIP-seq    Data format 
     ENCFF548NBY_trophoblast_cell  ENCFF548NBY trophoblast_cell by ChIP-seq    Data format 
     ENCFF548NQR_trophoblast_cell  ENCFF548NQR trophoblast_cell by ChIP-seq    Data format 
     ENCFF565SHI_H1  ENCFF565SHI H1 by ChIP-seq    Data format 
     ENCFF571UTM_H1  ENCFF571UTM H1 by ChIP-seq    Data format 
     ENCFF611MWG_trophoblast_cell  ENCFF611MWG trophoblast_cell by ChIP-seq    Data format 
     ENCFF654MQY_trophoblast_cell  ENCFF654MQY trophoblast_cell by ChIP-seq    Data format 
     ENCFF672UEM_IMR-90  ENCFF672UEM IMR-90 by ChIP-seq    Data format 
     ENCFF695LJE_IMR-90  ENCFF695LJE IMR-90 by ChIP-seq    Data format 
     ENCFF717RYS_mesendoderm  ENCFF717RYS mesendoderm by ChIP-seq    Data format 
     ENCFF720XZQ_mesenchymal_stem_cell  ENCFF720XZQ mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF729FWI_neuronal_stem_cell  ENCFF729FWI neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF750LLJ_neuronal_stem_cell  ENCFF750LLJ neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF754ZSZ_trophoblast_cell  ENCFF754ZSZ trophoblast_cell by ChIP-seq    Data format 
     ENCFF763EYD_IMR-90  ENCFF763EYD IMR-90 by ChIP-seq    Data format 
     ENCFF767MOP_H9  ENCFF767MOP H9 by ChIP-seq    Data format 
     ENCFF787ZXM_trophoblast_cell  ENCFF787ZXM trophoblast_cell by ChIP-seq    Data format 
     ENCFF791JDT_H1  ENCFF791JDT H1 by ChIP-seq    Data format 
     ENCFF792BLY_neuronal_stem_cell  ENCFF792BLY neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF814EXG_trophoblast_cell  ENCFF814EXG trophoblast_cell by ChIP-seq    Data format 
     ENCFF815ONV_H1  ENCFF815ONV H1 by ChIP-seq    Data format 
     ENCFF816FGU_mesenchymal_stem_cell  ENCFF816FGU mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF859GDG_IMR-90  ENCFF859GDG IMR-90 by ChIP-seq    Data format 
     ENCFF885EVW_H9  ENCFF885EVW H9 by ChIP-seq    Data format 
     ENCFF911GLV_H9  ENCFF911GLV H9 by ChIP-seq    Data format 
     ENCFF920TPY_H9  ENCFF920TPY H9 by ChIP-seq    Data format 
     ENCFF921UBQ_H9  ENCFF921UBQ H9 by ChIP-seq    Data format 
     ENCFF922NSE_mesenchymal_stem_cell  ENCFF922NSE mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF924AHK_mesenchymal_stem_cell  ENCFF924AHK mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF949BOQ_H9  ENCFF949BOQ H9 by ChIP-seq    Data format 
     ENCFF964DTB_neuronal_stem_cell  ENCFF964DTB neuronal_stem_cell by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF