Assay Summary H3K56ac Summary Track Settings
 
Roadmap Epigenome H3K56ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF002KMM_IMR-90  ENCFF002KMM IMR-90 by ChIP-seq    Data format 
     ENCFF010NMW_H9  ENCFF010NMW H9 by ChIP-seq    Data format 
     ENCFF028GAR_H1  ENCFF028GAR H1 by ChIP-seq    Data format 
     ENCFF041JUJ_IMR-90  ENCFF041JUJ IMR-90 by ChIP-seq    Data format 
     ENCFF043DRQ_H9  ENCFF043DRQ H9 by ChIP-seq    Data format 
     ENCFF049BHB_H9  ENCFF049BHB H9 by ChIP-seq    Data format 
     ENCFF095JOR_H1  ENCFF095JOR H1 by ChIP-seq    Data format 
     ENCFF109BGI_H1  ENCFF109BGI H1 by ChIP-seq    Data format 
     ENCFF135ZAJ_H1  ENCFF135ZAJ H1 by ChIP-seq    Data format 
     ENCFF163IYP_mesendoderm  ENCFF163IYP mesendoderm by ChIP-seq    Data format 
     ENCFF204GBD_IMR-90  ENCFF204GBD IMR-90 by ChIP-seq    Data format 
     ENCFF233LPT_IMR-90  ENCFF233LPT IMR-90 by ChIP-seq    Data format 
     ENCFF300UNL_IMR-90  ENCFF300UNL IMR-90 by ChIP-seq    Data format 
     ENCFF312ANJ_IMR-90  ENCFF312ANJ IMR-90 by ChIP-seq    Data format 
     ENCFF342BGA_H9  ENCFF342BGA H9 by ChIP-seq    Data format 
     ENCFF348ZPM_mesendoderm  ENCFF348ZPM mesendoderm by ChIP-seq    Data format 
     ENCFF350ATK_IMR-90  ENCFF350ATK IMR-90 by ChIP-seq    Data format 
     ENCFF350DDA_H9  ENCFF350DDA H9 by ChIP-seq    Data format 
     ENCFF409UDY_H9  ENCFF409UDY H9 by ChIP-seq    Data format 
     ENCFF447RUE_H1  ENCFF447RUE H1 by ChIP-seq    Data format 
     ENCFF452DDC_H1  ENCFF452DDC H1 by ChIP-seq    Data format 
     ENCFF468HYN_H9  ENCFF468HYN H9 by ChIP-seq    Data format 
     ENCFF509ZNJ_H1  ENCFF509ZNJ H1 by ChIP-seq    Data format 
     ENCFF510NCK_H1  ENCFF510NCK H1 by ChIP-seq    Data format 
     ENCFF526AHW_IMR-90  ENCFF526AHW IMR-90 by ChIP-seq    Data format 
     ENCFF542YUX_mesendoderm  ENCFF542YUX mesendoderm by ChIP-seq    Data format 
     ENCFF649JHH_H1  ENCFF649JHH H1 by ChIP-seq    Data format 
     ENCFF658RDX_H9  ENCFF658RDX H9 by ChIP-seq    Data format 
     ENCFF676NRK_IMR-90  ENCFF676NRK IMR-90 by ChIP-seq    Data format 
     ENCFF688YVV_H1  ENCFF688YVV H1 by ChIP-seq    Data format 
     ENCFF718DSK_H9  ENCFF718DSK H9 by ChIP-seq    Data format 
     ENCFF761LLW_H9  ENCFF761LLW H9 by ChIP-seq    Data format 
     ENCFF782SYZ_H1  ENCFF782SYZ H1 by ChIP-seq    Data format 
     ENCFF786HHY_H9  ENCFF786HHY H9 by ChIP-seq    Data format 
     ENCFF824JFI_H9  ENCFF824JFI H9 by ChIP-seq    Data format 
     ENCFF848DPT_H1  ENCFF848DPT H1 by ChIP-seq    Data format 
     ENCFF949YMV_IMR-90  ENCFF949YMV IMR-90 by ChIP-seq    Data format 
     ENCFF972AYW_IMR-90  ENCFF972AYW IMR-90 by ChIP-seq    Data format 
     ENCFF990FFP_IMR-90  ENCFF990FFP IMR-90 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF